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BRANEnet: Embedding Multilayer Networks for Omics Data Integration

surabhi Jagtap; Aurélie Pirayre; Frédérique Bidard; Laurent Duval; Fragkiskos D. Malliaros


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<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:contributor>surabhi Jagtap</dc:contributor>
  <dc:creator>surabhi Jagtap</dc:creator>
  <dc:creator>Aurélie Pirayre</dc:creator>
  <dc:creator>Frédérique Bidard</dc:creator>
  <dc:creator>Laurent Duval</dc:creator>
  <dc:creator>Fragkiskos D. Malliaros</dc:creator>
  <dc:date>2022-08-18</dc:date>
  <dc:description>BRANEnet is  a novel multi-omics integration framework for multilayer heterogeneous networks. In particular, it embeds graph-based information from multi-omics data in a lower-dimensional space.  To capture relevant context around each node of interest, it leverages a properly chosen random walk-based Positive Pointwise Mutual Information (PPMI) matrix.

 </dc:description>
  <dc:identifier>https://zenodo.org/record/7007534</dc:identifier>
  <dc:identifier>10.5281/zenodo.7007534</dc:identifier>
  <dc:identifier>oai:zenodo.org:7007534</dc:identifier>
  <dc:relation>info:eu-repo/grantAgreement/ANR//ANR-20-CE23-0009/</dc:relation>
  <dc:relation>doi:10.21203/rs.3.rs-1588328/v1</dc:relation>
  <dc:relation>doi:10.5281/zenodo.7007533</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:subject>multi-omics data</dc:subject>
  <dc:subject>multilayer network</dc:subject>
  <dc:subject>biological network integration</dc:subject>
  <dc:subject>graph representation learning</dc:subject>
  <dc:subject>regulatory network inference</dc:subject>
  <dc:title>BRANEnet: Embedding Multilayer Networks for Omics Data Integration</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>software</dc:type>
</oai_dc:dc>
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