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BRANEnet: Embedding Multilayer Networks for Omics Data Integration

surabhi Jagtap; Aurélie Pirayre; Frédérique Bidard; Laurent Duval; Fragkiskos D. Malliaros


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{
  "description": "<p>BRANEnet is&nbsp;&nbsp;a novel multi-omics integration framework for multilayer heterogeneous networks. In particular, it embeds graph-based information from multi-omics data in a lower-dimensional space.&nbsp; To capture relevant context around each node of interest, it&nbsp;leverages a properly chosen random walk-based Positive Pointwise Mutual Information (PPMI) matrix.</p>\n\n<p>&nbsp;</p>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "CentraleSupelec", 
      "@id": "https://orcid.org/0000-0001-7599-5434", 
      "@type": "Person", 
      "name": "surabhi Jagtap"
    }, 
    {
      "affiliation": "IFP energies nouvelles", 
      "@type": "Person", 
      "name": "Aur\u00e9lie Pirayre"
    }, 
    {
      "affiliation": "IFP energies nouvelles", 
      "@type": "Person", 
      "name": "Fr\u00e9d\u00e9rique Bidard"
    }, 
    {
      "affiliation": "IFP energies nouvelles", 
      "@type": "Person", 
      "name": "Laurent Duval"
    }, 
    {
      "affiliation": "CentraleSupelec", 
      "@type": "Person", 
      "name": "Fragkiskos D. Malliaros"
    }
  ], 
  "url": "https://zenodo.org/record/7007534", 
  "datePublished": "2022-08-18", 
  "keywords": [
    "multi-omics data", 
    "multilayer network", 
    "biological network integration", 
    "graph representation learning", 
    "regulatory network inference"
  ], 
  "contributor": [
    {
      "affiliation": "CentraleSupelec", 
      "@id": "https://orcid.org/0000-0001-7599-5434", 
      "@type": "Person", 
      "name": "surabhi Jagtap"
    }
  ], 
  "@context": "https://schema.org/", 
  "identifier": "https://doi.org/10.5281/zenodo.7007534", 
  "@id": "https://doi.org/10.5281/zenodo.7007534", 
  "@type": "SoftwareSourceCode", 
  "name": "BRANEnet: Embedding Multilayer Networks for Omics Data Integration"
}
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