10.5281/zenodo.7007534
https://zenodo.org/records/7007534
oai:zenodo.org:7007534
surabhi Jagtap
surabhi Jagtap
0000-0001-7599-5434
CentraleSupelec
Aurélie Pirayre
Aurélie Pirayre
IFP energies nouvelles
Frédérique Bidard
Frédérique Bidard
IFP energies nouvelles
Laurent Duval
Laurent Duval
IFP energies nouvelles
Fragkiskos D. Malliaros
Fragkiskos D. Malliaros
CentraleSupelec
BRANEnet: Embedding Multilayer Networks for Omics Data Integration
Zenodo
2022
multi-omics data
multilayer network
biological network integration
graph representation learning
regulatory network inference
surabhi Jagtap
surabhi Jagtap
0000-0001-7599-5434
CentraleSupelec
2022-08-18
10.21203/rs.3.rs-1588328/v1
10.5281/zenodo.7007533
Creative Commons Attribution 4.0 International
BRANEnet is a novel multi-omics integration framework for multilayer heterogeneous networks. In particular, it embeds graph-based information from multi-omics data in a lower-dimensional space. To capture relevant context around each node of interest, it leverages a properly chosen random walk-based Positive Pointwise Mutual Information (PPMI) matrix.
Agence Nationale de la Recherche
10.13039/501100001665
ANR-20-CE23-0009
Scalable and robust representation learning on graphs