{ "access": { "embargo": { "active": false, "reason": null }, "files": "public", "record": "public", "status": "open" }, "created": "2022-08-15T17:16:47.019626+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "files": { "count": 1, "enabled": true, "entries": { "cosanlab/nltools-v0.4.6.zip": { "checksum": "md5:fb61370e2a5a57f6298149b2cb5ce129", "ext": "zip", "id": "f9db277f-b3ab-46ca-8bbb-f9700033b08e", "key": "cosanlab/nltools-v0.4.6.zip", "metadata": null, "mimetype": "application/zip", "size": 3367563 } }, "order": [], "total_bytes": 3367563 }, "id": "6993641", "is_draft": false, "is_published": true, "links": { "access": "https://zenodo.org/api/records/6993641/access", "access_links": "https://zenodo.org/api/records/6993641/access/links", "access_request": "https://zenodo.org/api/records/6993641/access/request", "access_users": "https://zenodo.org/api/records/6993641/access/users", "archive": "https://zenodo.org/api/records/6993641/files-archive", "archive_media": "https://zenodo.org/api/records/6993641/media-files-archive", "communities": "https://zenodo.org/api/records/6993641/communities", "communities-suggestions": "https://zenodo.org/api/records/6993641/communities-suggestions", "doi": "https://doi.org/10.5281/zenodo.6993641", "draft": "https://zenodo.org/api/records/6993641/draft", "files": "https://zenodo.org/api/records/6993641/files", "latest": "https://zenodo.org/api/records/6993641/versions/latest", "latest_html": "https://zenodo.org/records/6993641/latest", "media_files": "https://zenodo.org/api/records/6993641/media-files", "parent": "https://zenodo.org/api/records/2229812", "parent_doi": "https://zenodo.org/doi/10.5281/zenodo.2229812", "parent_html": "https://zenodo.org/records/2229812", "requests": "https://zenodo.org/api/records/6993641/requests", "reserve_doi": "https://zenodo.org/api/records/6993641/draft/pids/doi", "self": "https://zenodo.org/api/records/6993641", "self_doi": "https://zenodo.org/doi/10.5281/zenodo.6993641", "self_html": "https://zenodo.org/records/6993641", "self_iiif_manifest": "https://zenodo.org/api/iiif/record:6993641/manifest", "self_iiif_sequence": "https://zenodo.org/api/iiif/record:6993641/sequence/default", "versions": "https://zenodo.org/api/records/6993641/versions" }, "media_files": { "count": 0, "enabled": false, "entries": {}, "order": [], "total_bytes": 0 }, "metadata": { "creators": [ { "affiliations": [ { "name": "Dartmouth College" } ], "person_or_org": { "family_name": "Luke Chang", "name": "Luke Chang", "type": "personal" } }, { "person_or_org": { "family_name": "Sam", "name": "Sam", "type": "personal" } }, { "person_or_org": { "family_name": "Eshin Jolly", "name": "Eshin Jolly", "type": "personal" } }, { "affiliations": [ { "name": "Dartmouth College" } ], "person_or_org": { "family_name": "Jin Hyun Cheong", "name": "Jin Hyun Cheong", "type": "personal" } }, { "affiliations": [ { "name": "@stampsy" } ], "person_or_org": { "family_name": "Anton Burnashev", "name": "Anton Burnashev", "type": "personal" } }, { "affiliations": [ { "name": "National Taiwan University" } ], "person_or_org": { "family_name": "Andy Chen", "name": "Andy Chen", "type": "personal" } }, { "person_or_org": { "family_name": "Marissa Clark", "name": "Marissa Clark", "type": "personal" } }, { "affiliations": [ { "name": "University of California" } ], "person_or_org": { "family_name": "Seth Frey", "name": "Seth Frey", "type": "personal" } }, { "affiliations": [ { "name": "@ContextLab @cosanlab" } ], "person_or_org": { "family_name": "Paxton Fitzpatrick", "name": "Paxton Fitzpatrick", "type": "personal" } } ], "description": "Changes\nFixes\n
onsets_to_dm
as error-checking wasn't quite rightnilearn
warningsnibabel
.get_affine()
-> .affine
Brain_Data.similarity
should be dramatically faster and now supports rank correlation: https://github.com/cosanlab/nltools/issues/308 https://github.com/cosanlab/nltools/issues/316 https://github.com/cosanlab/nltools/issues/404Design_Matrix.clean
will raise an error if there are duplicate column name.h5
objects in Brain_Data
now respects the mask
argument:\n```\n# User loads h5 that contains mask so that mask is used instead of the default MNI maskBrain_Data('brain.h5')
\nUser loads h5 that contains mask but also sets mask argument.\nNow mask value takes precedence over whatever mask is in h5\nso we issue a warning to the user letting them know on load\nBrain_Data('brain.h5', mask='path/to/nifti/mask.nii.gz')
\n\nUser loads h5 that does NOT contain a mask and doesnt set the mask\nargument so the default MNI mask is used, similar to nifti files\nThis is an implicit fallback just like with niftis\n\n\nUserWarning(...)
\n
Brain_Data('brain_nomask.h5')
\nUser loads h5 that does NOT contain mask but also sets mask argument\nMask value is used to learn transformation like niftis\nNo need to warn them about anything\nBrain_Data('brain_nomask.h5', mask='path/to/nifti/mask.nii.gz')\n```
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