Software Open Access
cosanlab/nltools: 0.4.6
Luke Chang; Sam; Eshin Jolly; Jin Hyun Cheong; Anton Burnashev; Andy Chen; Marissa Clark; Seth Frey; Paxton Fitzpatrick
Changes
Fixes
- Fixed warnings from
onsets_to_dmas error-checking wasn't quite right - Fixed deprecated
nilearnwarnings - Fixed deprecated
nibabel.get_affine()->.affine
Brain_Data.similarityshould be dramatically faster and now supports rank correlation: https://github.com/cosanlab/nltools/issues/308 https://github.com/cosanlab/nltools/issues/316 https://github.com/cosanlab/nltools/issues/404Design_Matrix.cleanwill raise an error if there are duplicate column name- Loading
.h5objects inBrain_Datanow respects themaskargument: ``` # User loads h5 that contains mask so that mask is used instead of the default MNI mask
Brain_Data('brain.h5')
User loads h5 that contains mask but also sets mask argument. Now mask value takes precedence over whatever mask is in h5 so we issue a warning to the user letting them know on loadBrain_Data('brain.h5', mask='path/to/nifti/mask.nii.gz')
User loads h5 that does NOT contain a mask and doesnt set the mask argument so the default MNI mask is used, similar to nifti files This is an implicit fallback just like with niftisUserWarning(...)
Brain_Data('brain_nomask.h5')
User loads h5 that does NOT contain mask but also sets mask argument Mask value is used to learn transformation like niftis No need to warn them about anythingBrain_Data('brain_nomask.h5', mask='path/to/nifti/mask.nii.gz') ```
Files
(3.4 MB)
| Name | Size | |
|---|---|---|
|
cosanlab/nltools-v0.4.6.zip
md5:fb61370e2a5a57f6298149b2cb5ce129 |
3.4 MB | Download |
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- Publication date:
- August 15, 2022
- DOI:
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- Related identifiers:
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- License (for files):
- Other (Open)