cosanlab/nltools: 0.4.6

Changes Fixes

• Fixed warnings from onsets_to_dm as error-checking wasn't quite right
• Fixed deprecated nilearn warnings
• Fixed deprecated nibabel .get_affine() -> .affine

New

• Brain_Data.similarity should be dramatically faster and now supports rank correlation: https://github.com/cosanlab/nltools/issues/308 https://github.com/cosanlab/nltools/issues/316 https://github.com/cosanlab/nltools/issues/404
• Design_Matrix.clean will raise an error if there are duplicate column name
• Loading .h5 objects in Brain_Data now respects the mask argument: ``` # User loads h5 that contains mask so that mask is used instead of the default MNI mask

Brain_Data('brain.h5')

User loads h5 that contains mask but also sets mask argument. Now mask value takes precedence over whatever mask is in h5 so we issue a warning to the user letting them know on load

Brain_Data('brain.h5', mask='path/to/nifti/mask.nii.gz')

UserWarning(...)

User loads h5 that does NOT contain a mask and doesnt set the mask argument so the default MNI mask is used, similar to nifti files This is an implicit fallback just like with niftis

Brain_Data('brain_nomask.h5')

User loads h5 that does NOT contain mask but also sets mask argument Mask value is used to learn transformation like niftis No need to warn them about anything

Brain_Data('brain_nomask.h5', mask='path/to/nifti/mask.nii.gz') ```