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immunomind/immunarch: Immunarch 0.7.0

Aleksandr Popov


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<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Aleksandr Popov</dc:creator>
  <dc:date>2022-08-11</dc:date>
  <dc:description>New function repSomaticHypermutation() to calculate number of mutations against the germline for each clonotype
Visualization for repGermline() beta: for now, specific clonotypes can be highlighted on the tree only by manually changing values in Type column
All repGermline() options are now starting with . point
repGermline(): .ref_only_first argument removed, because alleles are already unique for each species
New repGermline() option .align_j_gene for more precise (but slower) germline calculation
Updated tutorials
Various updates for texts and documentation
Various bugfixes in BCR pipeline</dc:description>
  <dc:identifier>https://zenodo.org/record/6984421</dc:identifier>
  <dc:identifier>10.5281/zenodo.6984421</dc:identifier>
  <dc:identifier>oai:zenodo.org:6984421</dc:identifier>
  <dc:relation>url:https://github.com/immunomind/immunarch/tree/0.7.0</dc:relation>
  <dc:relation>doi:10.5281/zenodo.3367200</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/covid-19</dc:relation>
  <dc:relation>url:https://zenodo.org/communities/zenodo</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:title>immunomind/immunarch: Immunarch 0.7.0</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>software</dc:type>
</oai_dc:dc>
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