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immunomind/immunarch: Immunarch 0.7.0

Aleksandr Popov


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  <identifier identifierType="DOI">10.5281/zenodo.6984421</identifier>
  <creators>
    <creator>
      <creatorName>Aleksandr Popov</creatorName>
      <affiliation>Immunomind</affiliation>
    </creator>
  </creators>
  <titles>
    <title>immunomind/immunarch: Immunarch 0.7.0</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2022</publicationYear>
  <dates>
    <date dateType="Issued">2022-08-11</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/6984421</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/immunomind/immunarch/tree/0.7.0</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3367200</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/covid-19</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/zenodo</relatedIdentifier>
  </relatedIdentifiers>
  <version>0.7.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;New function repSomaticHypermutation() to calculate number of mutations against the germline for each clonotype
Visualization for repGermline() beta: for now, specific clonotypes can be highlighted on the tree only by manually changing values in Type column
All repGermline() options are now starting with . point
repGermline(): .ref_only_first argument removed, because alleles are already unique for each species
New repGermline() option .align_j_gene for more precise (but slower) germline calculation
Updated tutorials
Various updates for texts and documentation
Various bugfixes in BCR pipeline&lt;/p&gt;</description>
  </descriptions>
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