Software Open Access
kipoi/models: v2022-06-17
Haimasree; Žiga Avsec; Thorsten Beier; Florian R. Hölzlwimmer; krrome; Jun Cheng; Jack Lanchantin; Bernardo P. de Almeida; Muhammed Hasan; LaraUrban; Nancy Xu; Sanjarbek Hudaiberdiev; Travis Wrightsman; Daniel Kim; Johnny Israeli; Alex Karollus; Anthony Gitter; Han Yuan; Ibrahim Taskiran; Jeffrey Lemoine; Katrin Leinweber; Stefan; Surag Nair; Vikram Agarwal; banwang27; mheinzinger
What's Changed
- Upgrade python version from 3.6 to 3.7 in model dependencies by @haimasree in https://github.com/kipoi/models/pull/310
- Update json by @haimasree in https://github.com/kipoi/models/pull/311
- Add test predictions for model groups by @haimasree in https://github.com/kipoi/models/pull/312
- Updated singularity containers by @haimasree in https://github.com/kipoi/models/pull/313
- Upgrading python 3.7 to python 3.8 for a subset of the models and the shared environment by @haimasree in https://github.com/kipoi/models/pull/314
- Adding a new shared env by @haimasree in https://github.com/kipoi/models/pull/315
- Updated singularity containers to their slim versions by @haimasree in https://github.com/kipoi/models/pull/316
- Updating apptainer version by @haimasree in https://github.com/kipoi/models/pull/317
- add scBasset model to model zoo by @hy395 in https://github.com/kipoi/models/pull/318
- Adding scbasset test predictions by @haimasree in https://github.com/kipoi/models/pull/319
- Updating json with container information about newly added model group scabasset by @haimasree in https://github.com/kipoi/models/pull/322
- Updating container json by @haimasree in https://github.com/kipoi/models/pull/323
- Sync common environment models with kipoi-containers by @haimasree in https://github.com/kipoi/models/pull/324
- updated scbasset model by @hy395 in https://github.com/kipoi/models/pull/325
- Updating test predictions for scbasset by @haimasree in https://github.com/kipoi/models/pull/326
- Fixed issues with new release of sorted-nearest and protobuf by @haimasree in https://github.com/kipoi/models/pull/328
- Fixed FactorNet by @haimasree in https://github.com/kipoi/models/pull/329
- First attempt at adding TREDNet model by @okurman in https://github.com/kipoi/models/pull/330
- Updated singularity containers by @haimasree in https://github.com/kipoi/models/pull/331
- Adding prediction files for TREDNet by @haimasree in https://github.com/kipoi/models/pull/332
- Adding trednet container info by @haimasree in https://github.com/kipoi/models/pull/333
- Move tensorflow and keras dendencies to conda from pip by @haimasree in https://github.com/kipoi/models/pull/334
- Removing pinned sorted nearest by @haimasree in https://github.com/kipoi/models/pull/335
- Fixing issues with triggering sync-containers workflow of kipoi-containers repo from this repo by @haimasree in https://github.com/kipoi/models/pull/337
- Updated container json by @haimasree in https://github.com/kipoi/models/pull/338
- Updating container urls by @haimasree in https://github.com/kipoi/models/pull/339
- Shared env update (moving tensorflow, keras) to conda from pip where ever possible by @haimasree in https://github.com/kipoi/models/pull/340
- @hy395 made their first contribution in https://github.com/kipoi/models/pull/318
- @okurman made their first contribution in https://github.com/kipoi/models/pull/330
Full Changelog: https://github.com/kipoi/models/compare/v2022-04-26...v2022-06-17
Files
(3.3 MB)
| Name | Size | |
|---|---|---|
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kipoi/models-v2022-06-17.zip
md5:2117842bac0ddc60abbaae6f605f063f |
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| Unique downloads | 103 | 0 |
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- Publication date:
- June 17, 2022
- DOI:
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- License (for files):
- Other (Open)