June 6, 2022 Dataset Open Access

Yinxiu Zhan

JSON Export

{
  "files": [
    {
      "links": {
        "self": "https://zenodo.org/api/files/77a3a091-18e8-4b08-8192-797b3690e956/Mach_et_al_NG_2022.zip"
      }, 
      "checksum": "md5:c12a9f2406c98e23b613c83b8823fd6c", 
      "bucket": "77a3a091-18e8-4b08-8192-797b3690e956", 
      "key": "Mach_et_al_NG_2022.zip", 
      "type": "zip", 
      "size": 139210096
    }
  ], 
  "owners": [
    359675
  ], 
  "doi": "10.5281/zenodo.6627715", 
  "stats": {
    "version_unique_downloads": 11.0, 
    "unique_views": 56.0, 
    "views": 60.0, 
    "version_views": 98.0, 
    "unique_downloads": 8.0, 
    "version_unique_views": 81.0, 
    "volume": 1113680768.0, 
    "version_downloads": 11.0, 
    "downloads": 8.0, 
    "version_volume": 29316519501.0
  }, 
  "links": {
    "doi": "https://doi.org/10.5281/zenodo.6627715", 
    "conceptdoi": "https://doi.org/10.5281/zenodo.6627714", 
    "bucket": "https://zenodo.org/api/files/77a3a091-18e8-4b08-8192-797b3690e956", 
    "conceptbadge": "https://zenodo.org/badge/doi/10.5281/zenodo.6627714.svg", 
    "html": "https://zenodo.org/record/6627715", 
    "latest_html": "https://zenodo.org/record/7127868", 
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.6627715.svg", 
    "latest": "https://zenodo.org/api/records/7127868"
  }, 
  "conceptdoi": "10.5281/zenodo.6627714", 
  "created": "2022-07-06T12:54:40.734404+00:00", 
  "updated": "2022-09-30T07:55:00.091492+00:00", 
  "conceptrecid": "6627714", 
  "revision": 5, 
  "id": 6627715, 
  "metadata": {
    "access_right_category": "success", 
    "doi": "10.5281/zenodo.6627715", 
    "version": "0", 
    "language": "eng", 
    "title": "Cohesin and CTCF control the dynamics of chromosome folding", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "related_identifiers": [
      {
        "scheme": "doi", 
        "identifier": "10.5281/zenodo.6627714", 
        "relation": "isVersionOf"
      }
    ], 
    "relations": {
      "version": [
        {
          "count": 4, 
          "index": 0, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "6627714"
          }, 
          "is_last": false, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "7127868"
          }
        }
      ]
    }, 
    "grants": [
      {
        "code": "813327", 
        "links": {
          "self": "https://zenodo.org/api/grants/10.13039/501100000780::813327"
        }, 
        "title": "Chromatin architecture and Design", 
        "acronym": "ChromDesign", 
        "program": "H2020", 
        "funder": {
          "doi": "10.13039/501100000780", 
          "acronyms": [], 
          "name": "European Commission", 
          "links": {
            "self": "https://zenodo.org/api/funders/10.13039/501100000780"
          }
        }
      }, 
      {
        "code": "813282", 
        "links": {
          "self": "https://zenodo.org/api/grants/10.13039/501100000780::813282"
        }, 
        "title": "Predictive Epigenetics: Fusing Theory and Experiment", 
        "acronym": "PEP-NET", 
        "program": "H2020", 
        "funder": {
          "doi": "10.13039/501100000780", 
          "acronyms": [], 
          "name": "European Commission", 
          "links": {
            "self": "https://zenodo.org/api/funders/10.13039/501100000780"
          }
        }
      }, 
      {
        "code": "748091", 
        "links": {
          "self": "https://zenodo.org/api/grants/10.13039/501100000780::748091"
        }, 
        "title": "Understanding long-range transcriptional regulation in the context of the 3D genome organization", 
        "acronym": "3DQuant", 
        "program": "H2020", 
        "funder": {
          "doi": "10.13039/501100000780", 
          "acronyms": [], 
          "name": "European Commission", 
          "links": {
            "self": "https://zenodo.org/api/funders/10.13039/501100000780"
          }
        }
      }, 
      {
        "code": "759366", 
        "links": {
          "self": "https://zenodo.org/api/grants/10.13039/501100000780::759366"
        }, 
        "title": "Biophysical mechanisms of long-range transcriptional regulation", 
        "acronym": "BioMeTRe", 
        "program": "H2020", 
        "funder": {
          "doi": "10.13039/501100000780", 
          "acronyms": [], 
          "name": "European Commission", 
          "links": {
            "self": "https://zenodo.org/api/funders/10.13039/501100000780"
          }
        }
      }
    ], 
    "keywords": [
      "chromosome dynamics", 
      "single particle tracking", 
      "ctcf", 
      "cohesin"
    ], 
    "publication_date": "2022-06-06", 
    "creators": [
      {
        "orcid": "0000-0001-7702-6207", 
        "affiliation": "Istituto Europeo di Oncologia", 
        "name": "Yinxiu Zhan"
      }
    ], 
    "access_right": "open", 
    "resource_type": {
      "type": "dataset", 
      "title": "Dataset"
    }, 
    "description": "<p>The dataset contains all the tracking data from Mach et al 2022 paper.</p>\n\n<p>Each file has the following header:</p>\n\n<p>x,y,z: spot coordinate. For dual color imaging, the distance along x,y and z across channels</p>\n\n<p>track: track id</p>\n\n<p>frame: time frame</p>\n\n<p>cell: cell id</p>"
  }
}