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NBISweden/AGAT: AGAT-v0.9.2

Jacques Dainat; Darío Hereñú; Ed Davis; Kathryn Crouch; LucileSol; Nuno Agostinho; pascal-git; tayyrov

  • agat_convert_sp_gff2gtf.pl - fix #245 by making CDS identifier uniq using start and stop position on to of ID because they can share a same ID
  • agat_sp_extract_sequences.pl - fix #246 : Remove name from header (now use --keep_attributes and the original attribute tag will be use instead ). Add --keep_attributes and --keep_parent_attributes to keep information fromm GFF into the fasta. Update test accordingly.
  • New script agat_sq_reverse_complement.pl - fix #248
  • add missing dependency LWP::Protocol::https dependency used to catch SO on the fly from URI/URL - fix #260
  • update doc
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