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AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Fröhlich, Fabian; Weindl, Daniel; Schälte, Yannik; Pathirana, Dilan; Paszkowski, Lukasz; Lines, Glenn Terje; Stapor, Paul; Hasenauer, Jan


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    <subfield code="a">AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models</subfield>
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    <subfield code="a">&lt;p&gt;Features:&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;Performance: Limit newton step convergence check by @FFroehlich in &lt;a href="https://github.com/AMICI-dev/AMICI/pull/1780"&gt;https://github.com/AMICI-dev/AMICI/pull/1780&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;More informative NaN/Inf warnings by @dweindl in &lt;a href="https://github.com/AMICI-dev/AMICI/pull/1640"&gt;https://github.com/AMICI-dev/AMICI/pull/1640&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;SBML import can now handle initial events by @FFroehlich in &lt;a href="https://github.com/AMICI-dev/AMICI/pull/1789"&gt;https://github.com/AMICI-dev/AMICI/pull/1789&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;Fixes:&lt;/p&gt;
&lt;ul&gt;
&lt;li&gt;Avoid error if no measurements in PEtab problem; fixed type handling in PEtab parameter mapping by @dilpath in &lt;a href="https://github.com/AMICI-dev/AMICI/pull/1783"&gt;https://github.com/AMICI-dev/AMICI/pull/1783&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Fixed substitution of expressions in root and stau by @dilpath in &lt;a href="https://github.com/AMICI-dev/AMICI/pull/1784"&gt;https://github.com/AMICI-dev/AMICI/pull/1784&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Workaround for PEtab problems with state-dependent noise models by @dweindl in &lt;a href="https://github.com/AMICI-dev/AMICI/pull/1791"&gt;https://github.com/AMICI-dev/AMICI/pull/1791&lt;/a&gt;&lt;/li&gt;
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