Fröhlich, Fabian
Weindl, Daniel
Schälte, Yannik
Pathirana, Dilan
Paszkowski, Lukasz
Lines, Glenn Terje
Stapor, Paul
Hasenauer, Jan
2022-05-06
<p>Features:</p>
<ul>
<li>Performance: Limit newton step convergence check by @FFroehlich in <a href="https://github.com/AMICI-dev/AMICI/pull/1780">https://github.com/AMICI-dev/AMICI/pull/1780</a></li>
<li>More informative NaN/Inf warnings by @dweindl in <a href="https://github.com/AMICI-dev/AMICI/pull/1640">https://github.com/AMICI-dev/AMICI/pull/1640</a></li>
<li>SBML import can now handle initial events by @FFroehlich in <a href="https://github.com/AMICI-dev/AMICI/pull/1789">https://github.com/AMICI-dev/AMICI/pull/1789</a></li>
</ul>
<p>Fixes:</p>
<ul>
<li>Avoid error if no measurements in PEtab problem; fixed type handling in PEtab parameter mapping by @dilpath in <a href="https://github.com/AMICI-dev/AMICI/pull/1783">https://github.com/AMICI-dev/AMICI/pull/1783</a></li>
<li>Fixed substitution of expressions in root and stau by @dilpath in <a href="https://github.com/AMICI-dev/AMICI/pull/1784">https://github.com/AMICI-dev/AMICI/pull/1784</a></li>
<li>Workaround for PEtab problems with state-dependent noise models by @dweindl in <a href="https://github.com/AMICI-dev/AMICI/pull/1791">https://github.com/AMICI-dev/AMICI/pull/1791</a></li>
</ul>
If you use this software, please cite both the article from preferred-citation and the software itself.
https://doi.org/10.5281/zenodo.6524929
oai:zenodo.org:6524929
Zenodo
https://github.com/AMICI-dev/AMICI/tree/v0.11.29
https://doi.org/10.5281/zenodo.597928
info:eu-repo/semantics/openAccess
Other (Open)
AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models
info:eu-repo/semantics/other