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AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Fröhlich, Fabian; Weindl, Daniel; Schälte, Yannik; Pathirana, Dilan; Paszkowski, Lukasz; Lines, Glenn Terje; Stapor, Paul; Hasenauer, Jan


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{
  "description": "<p>Features:</p>\n<ul>\n<li>Performance: Limit newton step convergence check by @FFroehlich in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1780\">https://github.com/AMICI-dev/AMICI/pull/1780</a></li>\n<li>More informative NaN/Inf warnings by @dweindl in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1640\">https://github.com/AMICI-dev/AMICI/pull/1640</a></li>\n<li>SBML import can now handle initial events by @FFroehlich in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1789\">https://github.com/AMICI-dev/AMICI/pull/1789</a></li>\n</ul>\n<p>Fixes:</p>\n<ul>\n<li>Avoid error if no measurements in PEtab problem; fixed type handling in PEtab parameter mapping by @dilpath in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1783\">https://github.com/AMICI-dev/AMICI/pull/1783</a></li>\n<li>Fixed substitution of expressions in root and stau by @dilpath in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1784\">https://github.com/AMICI-dev/AMICI/pull/1784</a></li>\n<li>Workaround for PEtab problems with state-dependent noise models by @dweindl in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1791\">https://github.com/AMICI-dev/AMICI/pull/1791</a></li>\n</ul>", 
  "license": "", 
  "creator": [
    {
      "@id": "https://orcid.org/0000-0002-5360-4292", 
      "@type": "Person", 
      "name": "Fr\u00f6hlich, Fabian"
    }, 
    {
      "@id": "https://orcid.org/0000-0001-9963-6057", 
      "@type": "Person", 
      "name": "Weindl, Daniel"
    }, 
    {
      "@id": "https://orcid.org/0000-0003-1293-820X", 
      "@type": "Person", 
      "name": "Sch\u00e4lte, Yannik"
    }, 
    {
      "@id": "https://orcid.org/0000-0001-7000-2659", 
      "@type": "Person", 
      "name": "Pathirana, Dilan"
    }, 
    {
      "@type": "Person", 
      "name": "Paszkowski, Lukasz"
    }, 
    {
      "@id": "https://orcid.org/0000-0002-6294-1805", 
      "@type": "Person", 
      "name": "Lines, Glenn Terje"
    }, 
    {
      "@id": "https://orcid.org/0000-0002-7567-3985", 
      "@type": "Person", 
      "name": "Stapor, Paul"
    }, 
    {
      "@id": "https://orcid.org/0000-0002-4935-3312", 
      "@type": "Person", 
      "name": "Hasenauer, Jan"
    }
  ], 
  "url": "https://zenodo.org/record/6524929", 
  "codeRepository": "https://github.com/AMICI-dev/AMICI/tree/v0.11.29", 
  "datePublished": "2022-05-06", 
  "version": "v0.11.29", 
  "@context": "https://schema.org/", 
  "identifier": "https://doi.org/10.5281/zenodo.6524929", 
  "@id": "https://doi.org/10.5281/zenodo.6524929", 
  "@type": "SoftwareSourceCode", 
  "name": "AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models"
}
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