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AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Fröhlich, Fabian; Weindl, Daniel; Schälte, Yannik; Pathirana, Dilan; Paszkowski, Lukasz; Lines, Glenn Terje; Stapor, Paul; Hasenauer, Jan


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    "description": "<p>Features:</p>\n<ul>\n<li>Performance: Limit newton step convergence check by @FFroehlich in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1780\">https://github.com/AMICI-dev/AMICI/pull/1780</a></li>\n<li>More informative NaN/Inf warnings by @dweindl in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1640\">https://github.com/AMICI-dev/AMICI/pull/1640</a></li>\n<li>SBML import can now handle initial events by @FFroehlich in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1789\">https://github.com/AMICI-dev/AMICI/pull/1789</a></li>\n</ul>\n<p>Fixes:</p>\n<ul>\n<li>Avoid error if no measurements in PEtab problem; fixed type handling in PEtab parameter mapping by @dilpath in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1783\">https://github.com/AMICI-dev/AMICI/pull/1783</a></li>\n<li>Fixed substitution of expressions in root and stau by @dilpath in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1784\">https://github.com/AMICI-dev/AMICI/pull/1784</a></li>\n<li>Workaround for PEtab problems with state-dependent noise models by @dweindl in <a href=\"https://github.com/AMICI-dev/AMICI/pull/1791\">https://github.com/AMICI-dev/AMICI/pull/1791</a></li>\n</ul>", 
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    "title": "AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models", 
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