Software Open Access
kipoi/models: v2022-04-26
Haimasree; Žiga Avsec; Thorsten Beier; Florian R. Hölzlwimmer; krrome; Jun Cheng; Jack Lanchantin; Bernardo P. de Almeida; Muhammed Hasan; LaraUrban; Nancy Xu; Travis Wrightsman; Daniel Kim; Johnny Israeli; Alex Karollus; Anthony Gitter; Ibrahim Taskiran; Jeffrey Lemoine; Katrin Leinweber; Stefan; Surag Nair; Vikram Agarwal; banwang27; mheinzinger
This would be the last release with models with python=3.6. Most of the models (except KipoiSplice and SeqVec) will be upgraded to python 3.7 as python 3.6 has been EOL-ed. Although Kipoi still supports python=3.6, in future if that changes, kipoi version also must be pinned in model.yaml(s) in the remaining models.
What's Changed- Increased parallelism to avoid build timeout error by @haimasree in https://github.com/kipoi/models/pull/279
- Adding postprocessing back to maintain compatibiliy with kipoi-veff by @haimasree in https://github.com/kipoi/models/pull/281
- Fixed ci by @haimasree in https://github.com/kipoi/models/pull/282
- Fixed ci by @haimasree in https://github.com/kipoi/models/pull/283
- Remove postprocessing from DeepSEA by @haimasree in https://github.com/kipoi/models/pull/284
- Fix APARENT/site_probabilities output labels by @twrightsman in https://github.com/kipoi/models/pull/285
- Add more parallelism to avoid frequent circleci issue with context deadline by @haimasree in https://github.com/kipoi/models/pull/286
- Updated links to singularity containers by @haimasree in https://github.com/kipoi/models/pull/287
- Adding a way to sync with kipoi-containers by @haimasree in https://github.com/kipoi/models/pull/288
- Fix sync workflow by @haimasree in https://github.com/kipoi/models/pull/289
- Added DeepSTARR by @bernardo-de-almeida in https://github.com/kipoi/models/pull/290
- Adding precision for cross platform testing by @haimasree in https://github.com/kipoi/models/pull/291
- Adding DeepSTARR containers by @haimasree in https://github.com/kipoi/models/pull/292
- Adjust APARENT model by @Hoeze in https://github.com/kipoi/models/pull/293
- Update container jsons by @haimasree in https://github.com/kipoi/models/pull/294
- Removing ambiguity for model class definition by @haimasree in https://github.com/kipoi/models/pull/295
- Fixed ci by @haimasree in https://github.com/kipoi/models/pull/296
- Aparent update by @Hoeze in https://github.com/kipoi/models/pull/297
- add variant to APARENT metadata by @Hoeze in https://github.com/kipoi/models/pull/298
- Update container jsons by @haimasree in https://github.com/kipoi/models/pull/299
- Update container jsons by @haimasree in https://github.com/kipoi/models/pull/300
- Update json by @haimasree in https://github.com/kipoi/models/pull/302
- Update container jsons by @haimasree in https://github.com/kipoi/models/pull/303
- Update container jsons by @haimasree in https://github.com/kipoi/models/pull/304
- Updating ci by @haimasree in https://github.com/kipoi/models/pull/305
- Add apptainer by @haimasree in https://github.com/kipoi/models/pull/306
- singularity container images with updated links by @haimasree in https://github.com/kipoi/models/pull/307
- Fixed ci and added conda-libmamba-solver by @haimasree in https://github.com/kipoi/models/pull/308
- Fixed ci by @haimasree in https://github.com/kipoi/models/pull/309
- @twrightsman made their first contribution in https://github.com/kipoi/models/pull/285
- @bernardo-de-almeida made their first contribution in https://github.com/kipoi/models/pull/290
Full Changelog: https://github.com/kipoi/models/compare/v2021-11-15...v2022-04-26
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kipoi/models-v2022-04-26.zip
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- Publication date:
- April 26, 2022
- DOI:
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- License (for files):
- Other (Open)