Preview

hpi-dhc-ggponc_annotation-868b338
- .gitignore
  
  2.1 kB
- .gitmodules
  
  114 Bytes
- LICENSE.txt
  
  35.1 kB
- README.md
  
  4.2 kB
- annotation_guide
  - anno_guide.pdf
    
    182.6 kB
- conftest.py
  
  0 Bytes
- data
  - .gitignore
    
    73 Bytes
- experiments
  - .gitignore
    
    28 Bytes
  - 01_ggponc_coarse_short.yaml
    
    439 Bytes
  - 02_ggponc_fine_short.yaml
    
    533 Bytes
  - 03_ggponc_coarse_long.yaml
    
    433 Bytes
  - 04_ggponc_fine_long.yaml
    
    524 Bytes
  - error_analysis.py
    
    8.5 kB
  - ggponc_base_config.yaml
    
    1.5 kB
  - huggingface_utils.py
    
    4.9 kB
  - run_experiment.py
    
    6.7 kB
  - sweep.sh
    
    264 Bytes
- gamma_agreement.py
  
  2.5 kB
- inception-analytics
  - .gitignore
    
    147 Bytes
  - README.md
    
    1.6 kB
  - analytics.py
    
    16.8 kB
  - dashboard.py
    
    5.6 kB
  - data
    - Example_Project_POS.zip
      
      182.8 kB
  - example.py
    
    630 Bytes
  - img
    - dashboard.png
      
      277.2 kB
  - install.sh
    
    266 Bytes
  - requirements.txt
    
    101 Bytes
  - run_streamlit.sh
    
    293 Bytes
  - streamlit_utils.py
    
    2.9 kB
  - utils.py
    
    5.6 kB
- notebooks
  - 01_Statistics.ipynb
    
    54.1 kB
  - 02_NER_Baselines.ipynb
    
    32.7 kB
  - 03_NER_Analysis.ipynb
    
    113.6 kB
  - 04_spaCy_Spancat.ipynb
    
    4.0 kB
  - stats_util.py
    
    672 Bytes
- requirements.txt
  
  202 Bytes
- spacy
  - .gitignore
    
    15 Bytes
  - configs
    - spancat.cfg
      
      3.8 kB
  - project.lock
    
    723 Bytes
  - project.yml
    
    2.1 kB
  - run_training.sh
    
    229 Bytes
  - scripts
    - evaluate.py
      
      2.1 kB
  - snomed_spans.py
    
    5.1 kB
- test
  - convert_annotation_test.py
    
    53.6 kB
  - test_data
    - 01_magenkarzinom_0192.tsv
      
      38.0 kB
    - 03_lungenkarzinom_0010.tsv
      
      29.8 kB
    - 03_lungenkarzinom_0621.tsv
      
      9.8 kB
    - 04_praevention-zervixkarzinom_0211.tsv
      
      37.6 kB
    - 05_zervixkarzinom_0265.tsv
      
      23.8 kB
    - 07_malignes-melanom_0207.tsv
      
      31.0 kB
    - 08_aktinische-keratose-und-plattenepithelkarzinom-der-haut_0075.tsv
      
      28.0 kB
    - 11_hepatozellulaeres-karzinom-und-biliaere-karzinome_0249.tsv
      
      21.8 kB
    - 18_hodgkin-lymphom_0051.tsv
      
      105.1 kB
    - 21_hodentumoren_0260.tsv
      
      66.2 kB
    - 22_prostatakarzinom_0334.tsv
      
      25.5 kB
  - test_files
    - test_empty_file.tsv
      
      781 Bytes
    - test_fragment.tsv
      
      910 Bytes
    - test_fragment_spacy.tsv
      
      1.3 kB
    - test_gap.tsv
      
      1.6 kB
    - test_multi_branches.tsv
      
      4.9 kB
    - test_multi_spec.tsv
      
      1.2 kB
    - test_multi_spec_gap.tsv
      
      1.1 kB
    - test_null.tsv
      
      4.5 kB
    - test_problem.tsv
      
      1.1 kB
    - test_simple.tsv
      
      1.2 kB
    - test_specification_fragment.tsv
      
      1.8 kB
    - test_unclosable_gap.tsv
      
      1.6 kB
- util
  - ConvertSpacy.ipynb
    
    275.5 kB
  - convert_annotations.py
    
    23.4 kB
  - temp.spacy
    
    23.3 kB

hpi-dhc/ggponc_annotation-ggponc_v2.0_lrec.zip