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Software Open Access

LayNii: A software suite for layer-fMRI

Huber, Laurentius; Benedikt, Poser; Bandettini, Peter; Arora, Kabir; Wagstyl, Konrad; Cho, Shinho; Goense, Jozien; Nothnagel, Nils; Morgan, Andrew Tyler; van den Hurk, Job; Müller, Anna Katharina; Reynolds, Richard; Glen, Daniel; Goebel, Rainer; Gulban, Omer Faruk

Purpose of the release

LN2_MULTILATERATE and LN2_PATCH_FLATTEN focused release to serve as a checkpoint for:

  • Gulban, O. F., Bollmann, S., Huber, R., Wagstyl, K., Goebel, R., Poser, B. A., Kay, K., Ivanov, D. (2021). Mesoscopic Quantification of Cortical Architecture in the Living Human Brain. BioRxiv. https://doi.org/10.1101/2021.11.25.470023
Modifications
  • LN2_LAYERS now outputs approximately equal number of voxels for each layer with -equal_counts flag. This option can be useful for low resolution inputs (e.g. > 0.5 mm iso.). Note: when activating this flag, it will equalize the number of voxels for each layer without respecting equi-distant and equi-volume cortical depth measurements.
  • LN_RAGRUG now has -scale parameter to create rectangular tessellations at lower resolutions (integer multiples of the input voxel dimensions.
  • Binaries for MACOS M1 chip will be included from now on.
  • [v2.2.1] Minor fixes to outputs of LN2_MULTILATERATE and help menu improvements.
If you use this software, please cite it as below.
Files (80.3 MB)
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layerfMRI/LAYNII-v2.2.1.zip
md5:988a1bdb9901ab2f4ffcface2bfcd507 		80.3 MB Download
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Publication date:
July 16, 2021
DOI:
10.5281/zenodo.6351766

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Versions

Version v2.4.0 10.5281/zenodo.7858857 Apr 24, 2023
Version v2.3.0 10.5281/zenodo.7586233 Jul 16, 2021
Version 2.1.0 10.5281/zenodo.6351766 Jul 16, 2021
Version 2.1.0 10.5281/zenodo.5761207 Jul 16, 2021
Version 2.1.0 10.5281/zenodo.5504151 Jul 16, 2021
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Cite all versions? You can cite all versions by using the DOI 10.5281/zenodo.3514297. This DOI represents all versions, and will always resolve to the latest one. Read more.

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