Published February 28, 2022 | Version v1
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Supplementary Figure 1: The road to FAIR genomes: a gap analysis of NGS data generation and sharing in the Netherlands

  • 1. Amsterdam UMC, Vrije Universiteit Amsterdam, Department of Pathology, Cancer Center Amsterdam, Amsterdam, The Netherlands
  • 2. Lygature, Utrecht, The Netherlands
  • 3. University of Groningen, University Medical Center Groningen, Department of Genetics, Groningen, The Netherlands

Description

Supplementary Figure 1: a flow chart conceptualizing the gap analysis. A generic NGS process diagram was created, based on a commonly used care workflow (Step 1). Next, a questionnaire about the inventory of (meta)data standards and retrieval of gaps was drafted (Step 2), which together with the process diagram was used as a basis for the subsequent interviews (Step 3). In parallel with the first three steps, a short literature review was performed (Step 4). The interviews were processed and current gaps were identified, anonymized and classified (Step 5). Finally, the results are shared with the community through presentations, publications and suggestions for next steps for addressing the identified gaps.

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