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nf-core/viralrecon: nf-core/viralrecon v2.4 - Magnesium Marmoset

Harshil Patel; Sarai Varona; Sara Monzón; Jose Espinosa-Carrasco; Michael L Heuer; Anthony Underwood; Gisela Gabernet; nf-core bot; Phil Ewels; MiguelJulia; Stephen Kelly; Erika; Katrin Sameith; Maxime U. Garcia; jcurado; Kevin Menden

[2.4] - 2022-02-22 Enhancements & fixes
  • nf-core/tools#1415 - Make --outdir a mandatory parameter
  • [#281] - Nanopore medaka processing fails with error if model name, not model file, provided
  • [#286] - IVAR_VARIANTS silently failing when FAI index is missing
Parameters
Old parameter New parameter
--publish_dir_mode

NB: Parameter has been updated if both old and new parameter information is present.

NB: Parameter has been added if just the new parameter information is present.

NB: Parameter has been removed if new parameter information isn't present.

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