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This dataset provides the data needed for the Galaxy BASIC assembly workflow training tutorial (https://galaxy-synbiocad.org). This workflow provides a pathway to design plasmids encoding predicted metabolic pathways using the BASIC assembly method (https://doi.org/10.1021/sb500356d). It generates scripts allowing the automatic construction of these plasmids using an Opentrons liquid handling robot. After downloading these scripts on a computer connected to an Opentrons (https://opentrons.com), the user can perform the automatic construction of the plasmids on the bench.
\n\nThe content of the dataset is as follows:
\n\nan SBML file modeling a heterologous pathway producing lycopene such as those produced by the Pathway Analysis Workflow (https://galaxy-synbiocad.org).
\n\ta CSV file listing the parts to be used (linkers, backbone and promoters) in the constructions.
\n\ttwo YAML files providing two examples of settings, i.e. providing the identifiers of the laboratory equipment and the parameters of the DNA robot.
\n\tWe accept all Zenodo records that are to be used either in the Galaxy Training Materials, or just for a Galaxy Training Event!
", "description": "The GTN is an international group of Teachers, Learners, and Galaxy Community members all working towards the goal of reproducible, FAIR training in Galaxy!", "funding": [ { "award": { "id": "00k4n6c32::825775" }, "funder": { "id": "00k4n6c32" } }, { "award": { "identifiers": [ { "identifier": "https://gallantries.github.io/", "scheme": "url" } ], "number": "2020-1-NL01-KA203-064717", "title": { "en": "Gallantries: Bridging Training Communities in Life Science, Environment and Health" } }, "funder": { "id": "01v2m4n16" } }, { "award": { "id": "00k4n6c32::824087" }, "funder": { "id": "00k4n6c32" } }, { "award": { "id": "00k4n6c32::101046203" }, "funder": { "id": "00k4n6c32" } }, { "award": { "id": "001aqnf71::MR/V038966/1" }, "funder": { "id": "001aqnf71" } }, { "award": { "id": "00k4n6c32::773701" }, "funder": { "id": "00k4n6c32" } }, { "award": { "id": "00k4n6c32::871075" }, "funder": { "id": "00k4n6c32" } }, { "award": { "id": "00k4n6c32::101057970" }, "funder": { "id": "00k4n6c32" } } ], "page": "Community to share the datasets used in the tutorials from the Galaxy Training Network
Please see our training materials on https://training.galaxyproject.org, most of these use Zenodo for long term storage of their inputs to ensure our tutorials are maximally FAIR
", "title": "Galaxy Training Network", "type": { "id": "organization" }, "website": "https://training.galaxyproject.org/" }, "revision_id": 3, "slug": "galaxy-training", "updated": "2023-10-19T11:09:33.813977+00:00" } ], "ids": [ "9a2023b1-4d53-49eb-969e-a4d2e7d32f81" ] }, "id": "6123886", "pids": { "doi": { "client": "datacite", "identifier": "10.5281/zenodo.6123886", "provider": "datacite" } } }, "pids": { "doi": { "client": "datacite", "identifier": "10.5281/zenodo.6123887", "provider": "datacite" }, "oai": { "identifier": "oai:zenodo.org:6123887", "provider": "oai" } }, "revision_id": 4, "stats": { "all_versions": { "data_volume": 7017680.0, "downloads": 845, "unique_downloads": 369, "unique_views": 329, "views": 366 }, "this_version": { "data_volume": 6982074.0, "downloads": 842, "unique_downloads": 368, "unique_views": 327, "views": 364 } }, "status": "published", "updated": "2022-08-04T08:36:53.884824+00:00", "versions": { "index": 1, "is_latest": true } }