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eemR: eemR 0.1.4

Philippe Massicotte


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  <identifier identifierType="DOI">10.5281/zenodo.61080</identifier>
  <creators>
    <creator>
      <creatorName>Philippe Massicotte</creatorName>
    </creator>
  </creators>
  <titles>
    <title>eemR: eemR 0.1.4</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2016</publicationYear>
  <subjects>
    <subject>fluorescence</subject>
    <subject>dom</subject>
    <subject>PARAFAC</subject>
    <subject>EEM</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2016-08-29</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/61080</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/PMassicotte/eemR/tree/V0.1.4</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.595488</relatedIdentifier>
  </relatedIdentifiers>
  <version>V0.1.4</version>
  <rightsList>
    <rights rightsURI="https://opensource.org/licenses/GPL-2.0">GNU General Public License v2.0 only</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;ul&gt;
	&lt;li&gt;
	&lt;p&gt;eem_extract() is now more intuitive to use. remove argument has been replace by keep. If TRUE, the specified samples will be returned. If FALSE, they will be removed (#37).&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;eem_cut() now removes specified wavelenghts instead of keeping them.&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;eem_cut() gains an argument fill_with_na. If TRUE fluorescence at specified wavelengths will be replaced with NA instead of being removed.&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;File structure is now kept when performing inner-filter effect correction (#35).&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;Now using viridis space colors for plotting EEMs instead of color jet.&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;eem_remove_scattering() no longer tolower absorbance names and will assume that the provided absorbance spectra match exactly EEM&amp;#39;s names.&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;Fixing a bug that prevented the interactive plot to work properly.&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;summary(x) and print(x) now return a data frame containing summarized information on EEMs contained in x. See ?summary.eemlist.&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;eem_raman_normalisation() and eem_remove_blank() will average blank EEMs if more than one are provided or found in the folder (#23).&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;eem_raman_normalisation(), eem_remove_blank() and eem_inner_filter_effect() will now verify if the correction has been already performed. If so, an unmodified EEM will be returned.&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;eem_raman_normalisation() now interpolates blank EEM to ensure that em at 350 and excitation between 371 and 428 exist (#31).&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;eem_remove_blank() and eem_raman_normalisation() will now keep blank samples when automatic correction is used. When automatic correction is used, the &lt;em&gt;untransformed&lt;/em&gt; blank sample will be keep in the list.&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;An error will now occur if trying to perform blank correction after Raman normalization.&lt;/p&gt;
	&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
</resource>
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