August 29, 2016 Software Open Access

Philippe Massicotte

DCAT Export

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    <dct:title>eemR: eemR 0.1.4</dct:title>
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    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2016</dct:issued>
    <dcat:keyword>fluorescence</dcat:keyword>
    <dcat:keyword>dom</dcat:keyword>
    <dcat:keyword>PARAFAC</dcat:keyword>
    <dcat:keyword>EEM</dcat:keyword>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2016-08-29</dct:issued>
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    <dct:description>&lt;ul&gt; &lt;li&gt; &lt;p&gt;eem_extract() is now more intuitive to use. remove argument has been replace by keep. If TRUE, the specified samples will be returned. If FALSE, they will be removed (#37).&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;eem_cut() now removes specified wavelenghts instead of keeping them.&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;eem_cut() gains an argument fill_with_na. If TRUE fluorescence at specified wavelengths will be replaced with NA instead of being removed.&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;File structure is now kept when performing inner-filter effect correction (#35).&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;Now using viridis space colors for plotting EEMs instead of color jet.&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;eem_remove_scattering() no longer tolower absorbance names and will assume that the provided absorbance spectra match exactly EEM&amp;#39;s names.&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;Fixing a bug that prevented the interactive plot to work properly.&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;summary(x) and print(x) now return a data frame containing summarized information on EEMs contained in x. See ?summary.eemlist.&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;eem_raman_normalisation() and eem_remove_blank() will average blank EEMs if more than one are provided or found in the folder (#23).&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;eem_raman_normalisation(), eem_remove_blank() and eem_inner_filter_effect() will now verify if the correction has been already performed. If so, an unmodified EEM will be returned.&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;eem_raman_normalisation() now interpolates blank EEM to ensure that em at 350 and excitation between 371 and 428 exist (#31).&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;eem_remove_blank() and eem_raman_normalisation() will now keep blank samples when automatic correction is used. When automatic correction is used, the &lt;em&gt;untransformed&lt;/em&gt; blank sample will be keep in the list.&lt;/p&gt; &lt;/li&gt; &lt;li&gt; &lt;p&gt;An error will now occur if trying to perform blank correction after Raman normalization.&lt;/p&gt; &lt;/li&gt; &lt;/ul&gt;</dct:description>
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