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eemR: eemR 0.1.4

Philippe Massicotte

  • eem_extract() is now more intuitive to use. remove argument has been replace by keep. If TRUE, the specified samples will be returned. If FALSE, they will be removed (#37).

  • eem_cut() now removes specified wavelenghts instead of keeping them.

  • eem_cut() gains an argument fill_with_na. If TRUE fluorescence at specified wavelengths will be replaced with NA instead of being removed.

  • File structure is now kept when performing inner-filter effect correction (#35).

  • Now using viridis space colors for plotting EEMs instead of color jet.

  • eem_remove_scattering() no longer tolower absorbance names and will assume that the provided absorbance spectra match exactly EEM's names.

  • Fixing a bug that prevented the interactive plot to work properly.

  • summary(x) and print(x) now return a data frame containing summarized information on EEMs contained in x. See ?summary.eemlist.

  • eem_raman_normalisation() and eem_remove_blank() will average blank EEMs if more than one are provided or found in the folder (#23).

  • eem_raman_normalisation(), eem_remove_blank() and eem_inner_filter_effect() will now verify if the correction has been already performed. If so, an unmodified EEM will be returned.

  • eem_raman_normalisation() now interpolates blank EEM to ensure that em at 350 and excitation between 371 and 428 exist (#31).

  • eem_remove_blank() and eem_raman_normalisation() will now keep blank samples when automatic correction is used. When automatic correction is used, the untransformed blank sample will be keep in the list.

  • An error will now occur if trying to perform blank correction after Raman normalization.

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