Journal article Open Access
Pallarès-Masmitjà, Maria;
Ivančić, Dimitrije;
Mir-Pedrol, Júlia;
Jaraba-Wallace, Jessica;
Tagliani, Tommaso;
Oliva, Baldomero;
Rahmeh, Amal;
Sánchez-Mejías, Avencia;
Güell, Marc
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<dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/6104372</dct:identifier> <foaf:page rdf:resource="https://zenodo.org/record/6104372"/> <dct:creator> <rdf:Description rdf:about="http://orcid.org/0000-0002-7317-7793"> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0002-7317-7793</dct:identifier> <foaf:name>Pallarès-Masmitjà, Maria</foaf:name> <foaf:givenName>Maria</foaf:givenName> <foaf:familyName>Pallarès-Masmitjà</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:creator> <rdf:Description> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <foaf:name>Ivančić, Dimitrije</foaf:name> <foaf:givenName>Dimitrije</foaf:givenName> <foaf:familyName>Ivančić</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain - Barcelona Institute of Science and Technology, Barcelona, Spain</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:creator> <rdf:Description rdf:about="http://orcid.org/0000-0001-6104-9260"> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0001-6104-9260</dct:identifier> <foaf:name>Mir-Pedrol, Júlia</foaf:name> <foaf:givenName>Júlia</foaf:givenName> <foaf:familyName>Mir-Pedrol</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:creator> <rdf:Description> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <foaf:name>Jaraba-Wallace, Jessica</foaf:name> <foaf:givenName>Jessica</foaf:givenName> <foaf:familyName>Jaraba-Wallace</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:creator> <rdf:Description> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <foaf:name>Tagliani, Tommaso</foaf:name> <foaf:givenName>Tommaso</foaf:givenName> <foaf:familyName>Tagliani</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:creator> <rdf:Description rdf:about="http://orcid.org/0000-0003-0702-0250"> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0003-0702-0250</dct:identifier> <foaf:name>Oliva, Baldomero</foaf:name> <foaf:givenName>Baldomero</foaf:givenName> <foaf:familyName>Oliva</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:creator> <rdf:Description> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <foaf:name>Rahmeh, Amal</foaf:name> <foaf:givenName>Amal</foaf:givenName> <foaf:familyName>Rahmeh</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:creator> <rdf:Description> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <foaf:name>Sánchez-Mejías, Avencia</foaf:name> <foaf:givenName>Avencia</foaf:givenName> <foaf:familyName>Sánchez-Mejías</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:creator> <rdf:Description rdf:about="http://orcid.org/0000-0003-4000-7912"> <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0003-4000-7912</dct:identifier> <foaf:name>Güell, Marc</foaf:name> <foaf:givenName>Marc</foaf:givenName> <foaf:familyName>Güell</foaf:familyName> <org:memberOf> <foaf:Organization> <foaf:name>Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain</foaf:name> </foaf:Organization> </org:memberOf> </rdf:Description> </dct:creator> <dct:title>Find and cut-and-transfer (FiCAT) mammalian genome engineering</dct:title> <dct:publisher> <foaf:Agent> <foaf:name>Zenodo</foaf:name> </foaf:Agent> </dct:publisher> <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2021</dct:issued> <frapo:isFundedBy rdf:resource="info:eu-repo/grantAgreement/EC/H2020/825825/"/> <schema:funder> <foaf:Organization> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10.13039/100010661</dct:identifier> <foaf:name>European Commission</foaf:name> </foaf:Organization> </schema:funder> <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2021-12-03</dct:issued> <owl:sameAs rdf:resource="https://zenodo.org/record/6104372"/> <adms:identifier> <adms:Identifier> <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/6104372</skos:notation> <adms:schemeAgency>url</adms:schemeAgency> </adms:Identifier> </adms:identifier> <owl:sameAs rdf:resource="https://doi.org/10.1038/s41467-021-27183-x"/> <dct:isPartOf rdf:resource="https://zenodo.org/communities/upgrade-h2020-project"/> <dct:description><p><strong>Abstract</strong></p> <p>While multiple technologies for small allele genome editing exist, robust technologies for targeted integration of large DNA fragments in mammalian genomes are still missing. Here we develop a gene delivery tool (FiCAT) combining the precision of a CRISPR-Cas9 (find module), and the payload transfer efficiency of an engineered piggyBac transposase (cut-and-transfer module). FiCAT combines the functionality of Cas9 DNA scanning and targeting DNA, with piggyBac donor DNA processing and transfer capacity. PiggyBac functional domains are engineered providing increased on-target integration while reducing off-target events. We demonstrate efficient delivery and programmable insertion of small and large payloads in cellulo (human (Hek293T, K-562) and mouse (C2C12)) and in vivo in mouse liver. Finally, we evolve more efficient versions of FiCAT by generating a targeted diversity of 394,000 variants and undergoing 4 rounds of evolution. In this work, we develop a precise and efficient targeted insertion of multi kilobase DNA fragments in mammalian genomes.</p></dct:description> <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/> <dct:accessRights> <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess"> <rdfs:label>Open Access</rdfs:label> </dct:RightsStatement> </dct:accessRights> <dct:license rdf:resource="https://creativecommons.org/licenses/by/4.0/legalcode"/> <dcat:distribution> <dcat:Distribution> <dcat:accessURL rdf:resource="https://doi.org/10.1038/s41467-021-27183-x"/> <dcat:byteSize>1704334</dcat:byteSize> <dcat:downloadURL rdf:resource="https://zenodo.org/record/6104372/files/Pallares-Masmitja et al 2021.pdf"/> <dcat:mediaType>application/pdf</dcat:mediaType> </dcat:Distribution> </dcat:distribution> </rdf:Description> <foaf:Project rdf:about="info:eu-repo/grantAgreement/EC/H2020/825825/"> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">825825</dct:identifier> <dct:title>Unlocking Precision Gene Therapy</dct:title> <frapo:isAwardedBy> <foaf:Organization> <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">10.13039/100010661</dct:identifier> <foaf:name>European Commission</foaf:name> </foaf:Organization> </frapo:isAwardedBy> </foaf:Project> </rdf:RDF>
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