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khanlab/hippunfold: 1.0.0

Ali Khan; jordandekraker


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  <identifier identifierType="DOI">10.5281/zenodo.6092142</identifier>
  <creators>
    <creator>
      <creatorName>Ali Khan</creatorName>
    </creator>
    <creator>
      <creatorName>jordandekraker</creatorName>
    </creator>
  </creators>
  <titles>
    <title>khanlab/hippunfold: 1.0.0</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2022</publicationYear>
  <dates>
    <date dateType="Issued">2022-01-19</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/6092142</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/khanlab/hippunfold/tree/v1.0.0</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.4717972</relatedIdentifier>
  </relatedIdentifiers>
  <version>v1.0.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">Changes
🚀 Features
&lt;ul&gt;
&lt;li&gt;workflow updates to allow T2w without T1w @akhanf (#153)&lt;/li&gt;
&lt;li&gt;Unfold DG @jordandekraker (#146)&lt;/li&gt;
&lt;li&gt;single modality at a time @akhanf (#137)&lt;/li&gt;
&lt;li&gt;Neonate T1w workflow updates @akhanf (#124)&lt;/li&gt;
&lt;li&gt;added refvol to results for easier unfolded transforms @jordandekraker (#144)&lt;/li&gt;
&lt;li&gt;adds rules for composite warps from unfold and remove map to full grid @akhanf (#143)&lt;/li&gt;
&lt;li&gt;Cosine_rep to generate smooth, simple nativespace surfaces @jordandekraker (#117)&lt;/li&gt;
&lt;li&gt;updated hippb500 model @akhanf (#118)&lt;/li&gt;
&lt;li&gt;adds coords on surfaces, \&amp;amp; pre-smoothing for curv @akhanf (#110)&lt;/li&gt;
&lt;li&gt;Cropseg patch @akhanf (#105)&lt;/li&gt;
&lt;li&gt;Switch IO laplace (isopotential) coordinates to isovolume @jordandekraker (#96)&lt;/li&gt;
&lt;li&gt;add flag --no_reg_template for inputs that are already in space-CITI168 @jordandekraker (#99)&lt;/li&gt;
&lt;li&gt;new gyrification as surface area ratio @akhanf (#93)&lt;/li&gt;
&lt;/ul&gt;
🐛 Bug Fixes
&lt;ul&gt;
&lt;li&gt;allowing qc to use corobl @jordandekraker (#159)&lt;/li&gt;
&lt;li&gt;quick patch to prevent source config file from being modified @akhanf (#157)&lt;/li&gt;
&lt;li&gt;patch for skip_templateshape @jordandekraker (#152)&lt;/li&gt;
&lt;li&gt;minor fix to template shape injection @akhanf (#119)&lt;/li&gt;
&lt;li&gt;qc fixes @akhanf (#120)&lt;/li&gt;
&lt;li&gt;temporarily disable the vis regqc rule @akhanf (#114)&lt;/li&gt;
&lt;li&gt;added missing group directive @akhanf (#112)&lt;/li&gt;
&lt;li&gt;minor correction to subfield label names @jordandekraker (#108)&lt;/li&gt;
&lt;li&gt;fix typo in help usage @akhanf (#103)&lt;/li&gt;
&lt;li&gt;bugfix: pin version of batchgenerators @akhanf (#100)&lt;/li&gt;
&lt;li&gt;No more overlapping points in griddata interpolation in create_warps.py @jordandekraker (#95)&lt;/li&gt;
&lt;/ul&gt;
🧰 Maintenance
&lt;ul&gt;
&lt;li&gt;added logging @akhanf (#160)&lt;/li&gt;
&lt;li&gt;output refactoring, removed datatype=seg folders, added coords, warps @akhanf (#155)&lt;/li&gt;
&lt;li&gt;add generate dags github workflow @akhanf (#149)&lt;/li&gt;
&lt;li&gt;Auto-formatting and quality-checks @akhanf (#148)&lt;/li&gt;
&lt;li&gt;root dir change for snakebids 0.4.0 @akhanf (#145)&lt;/li&gt;
&lt;li&gt;Update release-drafter.yml @akhanf (#147)&lt;/li&gt;
&lt;li&gt;Update deps @akhanf (#140)&lt;/li&gt;
&lt;li&gt;removes deprecated and unused files @akhanf (#138)&lt;/li&gt;
&lt;li&gt;Add download model console script to pyproject @akhanf (#136)&lt;/li&gt;
&lt;li&gt;add requirements.txt from poetry export @akhanf (#135)&lt;/li&gt;
&lt;li&gt;remove old deploy github actions @akhanf (#134)&lt;/li&gt;
&lt;li&gt;replaces setup.py with pyproject.toml and poetry @akhanf (#131)&lt;/li&gt;
&lt;li&gt;Create manual_release_drafter.yml @akhanf (#133)&lt;/li&gt;
&lt;li&gt;adds bump_version and release drafter @akhanf (#132)&lt;/li&gt;
&lt;li&gt;pin docutils\&amp;lt;0.18 @akhanf (#115)&lt;/li&gt;
&lt;li&gt;update autotop v0.4.1, remove deprecated mcr cfg @akhanf (#109)&lt;/li&gt;
&lt;/ul&gt;
📝 Documentation
&lt;ul&gt;
&lt;li&gt;simple version for non-contributors @jordandekraker (#151)&lt;/li&gt;
&lt;li&gt;Docs from RST to Markdown @akhanf (#150)&lt;/li&gt;
&lt;li&gt;clarification and details for documentation @jordandekraker (#106)&lt;/li&gt;
&lt;li&gt;Tutorials \&amp;amp; examples @jordandekraker (#97)&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
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