##fileformat=VCFv4.2 ##FILTER= ##fileDate=20220128 ##source=freeBayes v1.3.2-dirty ##reference=reference/ref.fa ##contig= ##phasing=none ##commandline="freebayes -p 2 -P 0 -C 2 -F 0.05 --min-coverage 10 --min-repeat-entropy 1.0 -q 13 -m 60 --strict-vcf -f reference/ref.fa snps.bam --region MTB_anc:0-4411532" ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##bcftools_viewVersion=1.13+htslib-1.13 ##bcftools_viewCommand=view --include 'FMT/GT="1/1" && QUAL>=100.0 && FMT/DP>=10 && (FMT/AO)/(FMT/DP)>=0.1' snps.raw.vcf; Date=Fri Jan 28 10:09:37 2022 ##bcftools_annotateVersion=1.13+htslib-1.13 ##bcftools_annotateCommand=annotate --remove ^INFO/TYPE,^INFO/DP,^INFO/RO,^INFO/AO,^INFO/AB,^FORMAT/GT,^FORMAT/DP,^FORMAT/RO,^FORMAT/AO,^FORMAT/QR,^FORMAT/QA,^FORMAT/GL; Date=Fri Jan 28 10:09:37 2022 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT ERR6362484_fastq MTB_anc 2532 . C T 2372.62 . AB=0.0;AO=71;DP=71;QA=2679;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2679:-241.32,-21.3731,0.0 MTB_anc 9138 . C G 2901.19 . AB=0.0;AO=87;DP=87;QA=3267;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3267:-294.205,-26.1896,0.0 MTB_anc 9143 . C T 2791.61 . AB=0.0;AO=84;DP=84;QA=3147;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:3147:-283.414,-25.2865,0.0 MTB_anc 11701 . G A 2993.63 . AB=0.0;AO=89;DP=89;QA=3362;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:3362:-302.746,-26.7917,0.0 MTB_anc 13460 . G A 2752.88 . AB=0.0;AO=82;DP=82;QA=3096;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:3096:-278.824,-24.6845,0.0 MTB_anc 14401 . G A 2741.78 . AB=0.0;AO=82;DP=82;QA=3082;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:3082:-277.567,-24.6845,0.0 MTB_anc 15117 . G C 3395.32 . AB=0.0;AO=101;DP=101;QA=3808;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:101:0:0:101:3808:-342.859,-30.404,0.0 MTB_anc 21819 . C A 2439.59 . AB=0.0;AO=73;DP=73;QA=2747;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2747:-247.438,-21.9752,0.0 MTB_anc 23174 . A C 2552.65 . AB=0.0;AO=76;DP=76;QA=2870;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2870:-258.497,-22.8783,0.0 MTB_anc 27469 . G A 2306.75 . AB=0.0;AO=69;DP=69;QA=2605;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2605:-234.664,-20.7711,0.0 MTB_anc 29641 . G A 2104.6 . AB=0.0;AO=64;DP=64;QA=2375;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:2375:-213.978,-19.2659,0.0 MTB_anc 33436 . C T 1921.08 . AB=0.0;AO=58;DP=58;QA=2168;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:2168:-195.363,-17.4597,0.0 MTB_anc 33841 . C G 2472.92 . AB=0.0;AO=74;DP=75;QA=2792;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2792:-251.103,-22.2762,0.0 MTB_anc 36538 . C T 2136.6 . AB=0.0;AO=65;DP=65;QA=2416;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:2416:-217.669,-19.567,0.0 MTB_anc 39758 . G A 2897.18 . AB=0.0;AO=87;DP=87;QA=3263;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3263:-293.846,-26.1896,0.0 MTB_anc 42281 . A C 2620.74 . AB=0.0;AO=80;DP=81;QA=3004;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:38:80:3004:-266.754,-20.5862,0.0 MTB_anc 43945 . G A 2912.07 . AB=0.0;AO=87;DP=87;QA=3278;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3278:-295.194,-26.1896,0.0 MTB_anc 50557 . C T 2475.34 . AB=0.0;AO=74;DP=74;QA=2784;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2784:-250.764,-22.2762,0.0 MTB_anc 51949 . G A 2458.47 . AB=0.0;AO=75;DP=75;QA=2794;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2794:-251.666,-22.5773,0.0 MTB_anc 54394 . G A 2505.06 . AB=0.0;AO=75;DP=75;QA=2823;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2823:-254.27,-22.5773,0.0 MTB_anc 55533 . T TGCC 1156.12 . AB=0.0;AO=37;DP=40;QA=1323;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:40:0:0:37:1323:-119.026,-11.1381,0.0 MTB_anc 63214 . C T 1935.18 . AB=0.0;AO=58;DP=58;QA=2187;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:2187:-197.069,-17.4597,0.0 MTB_anc 67792 . C T 2527.42 . AB=0.0;AO=76;DP=76;QA=2849;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2849:-256.61,-22.8783,0.0 MTB_anc 70267 . T G 2455.62 . AB=0.0;AO=74;DP=74;QA=2767;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2767:-249.236,-22.2762,0.0 MTB_anc 71439 . CCGGGGGCCGGACGTCCCCCCCGCGA C 974.522 . AB=0.0;AO=32;DP=32;QA=1111;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:32:0:0:32:1111:-100.225,-9.63296,0.0 MTB_anc 84908 . C T 2501.47 . AB=0.0;AO=76;DP=77;QA=2847;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:38:76:2847:-252.634,-19.382,0.0 MTB_anc 89200 . T G 2749.92 . AB=0.0;AO=83;DP=83;QA=3098;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3098:-279.009,-24.9855,0.0 MTB_anc 93313 . C T 2439.36 . AB=0.0;AO=74;DP=75;QA=2779;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:38:74:2779:-246.518,-18.78,0.0 MTB_anc 97696 . C T 3087.49 . AB=0.0;AO=93;DP=93;QA=3490;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:3490:-314.263,-27.9958,0.0 MTB_anc 100068 . T C 2796.36 . AB=0.0;AO=84;DP=84;QA=3142;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:3142:-282.964,-25.2865,0.0 MTB_anc 103086 . C CCGG 2289.22 . AB=0.0;AO=71;DP=72;QA=2620;QR=37;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:72:1:37:71:2620:-232.317,-17.9763,0.0 MTB_anc 103600 . G A 2678.14 . AB=0.0;AO=80;DP=81;QA=3015;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:80:3015:-271.16,-24.0824,0.0 MTB_anc 122017 . C G 2929.93 . AB=0.0;AO=88;DP=89;QA=3295;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:88:3295:-296.344,-26.4906,0.0 MTB_anc 123520 . C T 2268.97 . AB=0.0;AO=68;DP=68;QA=2557;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2557:-230.349,-20.47,0.0 MTB_anc 125830 . G GA 2462.48 . AB=0.0;AO=74;DP=75;QA=2776;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:74:2776:-249.687,-22.2762,0.0 MTB_anc 126803 . G A 2819.18 . AB=0.0;AO=86;DP=86;QA=3168;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3168:-285.307,-25.8886,0.0 MTB_anc 131174 . T TG 2175.84 . AB=0.0;AO=66;DP=66;QA=2467;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2467:-222.254,-19.868,0.0 MTB_anc 138151 . G A 2424.07 . AB=0.0;AO=73;DP=73;QA=2729;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2729:-245.815,-21.9752,0.0 MTB_anc 139756 . C T 2359.12 . AB=0.0;AO=71;DP=71;QA=2655;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2655:-239.166,-21.3731,0.0 MTB_anc 143207 . C T 2834.59 . AB=0.0;AO=85;DP=85;QA=3186;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3186:-286.921,-25.5876,0.0 MTB_anc 145708 . G T 2107.72 . AB=0.0;AO=63;DP=63;QA=2381;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:2381:-214.517,-18.9649,0.0 MTB_anc 150969 . A AC 1665.67 . AB=0.0;AO=51;DP=51;QA=1891;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1891:-170.452,-15.3525,0.0 MTB_anc 195360 . C T 2391.74 . AB=0.0;AO=72;DP=72;QA=2709;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2709:-244.019,-21.6742,0.0 MTB_anc 197397 . G C 3043.17 . AB=0.0;AO=91;DP=91;QA=3422;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:3422:-308.146,-27.3937,0.0 MTB_anc 198007 . C T 2840.64 . AB=0.0;AO=86;DP=87;QA=3225;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:38:86:3225:-286.631,-22.3923,0.0 MTB_anc 199470 . G T 2013.17 . AB=0.0;AO=61;DP=61;QA=2279;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:2279:-205.347,-18.3628,0.0 MTB_anc 201188 . C G 2221.93 . AB=0.0;AO=67;DP=67;QA=2514;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2514:-226.483,-20.169,0.0 MTB_anc 206481 . GGGT CGGG 1566.94 . AB=0.0;AO=48;DP=52;QA=1783;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:48:1783:-160.371,-14.4494,0.0 MTB_anc 208316 . A AT 1160.91 . AB=0.0;AO=35;DP=35;QA=1317;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1317:-118.826,-10.5361,0.0 MTB_anc 208321 . CG T 1164.39 . AB=0.0;AO=35;DP=35;QA=1326;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:35:1326:-119.27,-10.5361,0.0 MTB_anc 217201 . C T 1773.74 . AB=0.0;AO=54;DP=54;QA=2016;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:2016:-181.691,-16.2556,0.0 MTB_anc 218605 . A G 3070.04 . AB=0.0;AO=93;DP=94;QA=3487;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:38:93:3487:-310.194,-24.4996,0.0 MTB_anc 223752 . G C 2019.78 . AB=0.0;AO=61;DP=61;QA=2287;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:2287:-206.066,-18.3628,0.0 MTB_anc 224901 . C G 1959.87 . AB=0.0;AO=59;DP=59;QA=2219;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:2219:-199.947,-17.7608,0.0 MTB_anc 225668 . T C 2837.98 . AB=0.0;AO=85;DP=85;QA=3190;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3190:-287.281,-25.5876,0.0 MTB_anc 226517 . C T 2182.12 . AB=0.0;AO=66;DP=66;QA=2464;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2464:-221.984,-19.868,0.0 MTB_anc 233358 . C A 2470.56 . AB=0.0;AO=74;DP=74;QA=2781;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2781:-250.495,-22.2762,0.0 MTB_anc 233364 . C G 2520.98 . AB=0.0;AO=76;DP=76;QA=2834;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2834:-255.262,-22.8783,0.0 MTB_anc 234494 . T TGC 1493.29 . AB=0.0;AO=45;DP=45;QA=1694;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:45:0:0:45:1694:-152.731,-13.5464,0.0 MTB_anc 236232 . G A 2966.32 . AB=0.0;AO=89;DP=89;QA=3349;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:3349:-301.58,-26.7917,0.0 MTB_anc 243598 . G A 2979.91 . AB=0.0;AO=91;DP=91;QA=3350;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:3350:-301.67,-27.3937,0.0 MTB_anc 249522 . C T 2662.32 . AB=0.0;AO=80;DP=80;QA=3012;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:3012:-271.27,-24.0824,0.0 MTB_anc 249537 . C T 2744.65 . AB=0.0;AO=83;DP=83;QA=3090;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3090:-278.292,-24.9855,0.0 MTB_anc 251575 . A G 2741.64 . AB=0.0;AO=82;DP=82;QA=3080;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:3080:-277.385,-24.6845,0.0 MTB_anc 251669 . C T 2438.1 . AB=0.0;AO=73;DP=73;QA=2748;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2748:-247.524,-21.9752,0.0 MTB_anc 252083 . A C 1879.34 . AB=0.0;AO=57;DP=57;QA=2147;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:2147:-193.473,-17.1587,0.0 MTB_anc 260282 . T G 1706.95 . AB=0.0;AO=52;DP=52;QA=1949;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:52:0:0:52:1949:-175.666,-15.6536,0.0 MTB_anc 263306 . T C 2932.77 . AB=0.0;AO=88;DP=88;QA=3297;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:3297:-296.903,-26.4906,0.0 MTB_anc 275328 . G C 3306.9 . AB=0.0;AO=100;DP=100;QA=3739;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:100:0:0:100:3739:-336.659,-30.103,0.0 MTB_anc 278385 . AT A 2554.33 . AB=0.0;AO=77;DP=77;QA=2872;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2872:-258.681,-23.1793,0.0 MTB_anc 283313 . G A 2771.58 . AB=0.0;AO=83;DP=83;QA=3117;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3117:-280.716,-24.9855,0.0 MTB_anc 289095 . A G 2443.63 . AB=0.0;AO=74;DP=74;QA=2762;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2762:-248.788,-22.2762,0.0 MTB_anc 291923 . C G 3029.39 . AB=0.0;AO=90;DP=90;QA=3401;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:3401:-306.254,-27.0927,0.0 MTB_anc 297337 . C T 2553.03 . AB=0.0;AO=77;DP=78;QA=2909;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:1:38:77:2909:-258.207,-19.6831,0.0 MTB_anc 304923 . G A 3069.51 . AB=0.0;AO=93;DP=94;QA=3481;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:1:38:93:3481:-309.657,-24.4996,0.0 MTB_anc 320180 . G A 2771.72 . AB=0.0;AO=84;DP=84;QA=3118;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:3118:-280.807,-25.2865,0.0 MTB_anc 321338 . T TC 1990.3 . AB=0.0;AO=61;DP=64;QA=2247;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:61:2247:-202.186,-18.3628,0.0 MTB_anc 322655 . C T 3017.2 . AB=0.0;AO=90;DP=90;QA=3387;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:3387:-304.997,-27.0927,0.0 MTB_anc 325505 . C T 2402.46 . AB=0.0;AO=72;DP=72;QA=2704;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2704:-243.569,-21.6742,0.0 MTB_anc 329923 . T C 2282.26 . AB=0.0;AO=69;DP=70;QA=2603;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:1:38:69:2603:-230.688,-17.2748,0.0 MTB_anc 330002 . G A 2621 . AB=0.0;AO=80;DP=82;QA=3016;QR=76;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:2:76:80:3016:-264.414,-17.4696,0.0 MTB_anc 331502 . G A 2737.42 . AB=0.0;AO=85;DP=87;QA=3162;QR=76;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:2:76:85:3162:-277.55,-18.9748,0.0 MTB_anc 331588 . A G 2912.53 . AB=0.0;AO=88;DP=88;QA=3299;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:3299:-297.084,-26.4906,0.0 MTB_anc 333212 . C G 2583.76 . AB=0.0;AO=77;DP=77;QA=2906;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2906:-261.736,-23.1793,0.0 MTB_anc 333292 . G A 3245.93 . AB=0.0;AO=98;DP=98;QA=3643;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:3643:-328.026,-29.5009,0.0 MTB_anc 342146 . C A 3131.85 . AB=0.0;AO=94;DP=94;QA=3517;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:3517:-316.69,-28.2968,0.0 MTB_anc 343281 . C G 3402.13 . AB=0.0;AO=103;DP=103;QA=3826;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3826:-344.49,-31.0061,0.0 MTB_anc 355181 . G A 2180.22 . AB=0.0;AO=67;DP=68;QA=2492;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:1:38:67:2492:-220.705,-16.6728,0.0 MTB_anc 361145 . T C 2573.67 . AB=0.0;AO=77;DP=77;QA=2893;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2893:-260.57,-23.1793,0.0 MTB_anc 381030 . G A 3680.59 . AB=0.0;AO=112;DP=113;QA=4179;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:113:1:38:112:4179:-372.434,-30.2191,0.0 MTB_anc 383081 . A G 2904.31 . AB=0.0;AO=88;DP=88;QA=3302;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:3302:-297.353,-26.4906,0.0 MTB_anc 391853 . G A 2774.3 . AB=0.0;AO=84;DP=84;QA=3153;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:3153:-283.953,-25.2865,0.0 MTB_anc 392261 . C T 2915.94 . AB=0.0;AO=87;DP=87;QA=3279;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3279:-295.283,-26.1896,0.0 MTB_anc 411371 . T C 2399.81 . AB=0.0;AO=74;DP=76;QA=2777;QR=76;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:2:76:74:2777:-242.919,-15.6635,0.0 MTB_anc 412280 . G T 2675.83 . AB=0.0;AO=80;DP=80;QA=3013;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:3013:-271.361,-24.0824,0.0 MTB_anc 422745 . C T 2182.21 . AB=0.0;AO=66;DP=66;QA=2467;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2467:-222.256,-19.868,0.0 MTB_anc 424320 . T TC 2350.13 . AB=0.0;AO=71;DP=73;QA=2656;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:71:2656:-238.874,-21.3731,0.0 MTB_anc 438271 . A G 2923.87 . AB=0.0;AO=88;DP=88;QA=3291;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:3291:-296.365,-26.4906,0.0 MTB_anc 445780 . T C 2654.78 . AB=0.0;AO=79;DP=79;QA=2988;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2988:-269.109,-23.7814,0.0 MTB_anc 447442 . T C 2608.69 . AB=0.0;AO=80;DP=81;QA=2960;QR=32;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:32:80:2960:-263.398,-21.1841,0.0 MTB_anc 455325 . GGGGC CGGGT 2727.43 . AB=0.0;AO=82;DP=82;QA=3076;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:3076:-276.764,-24.6845,0.0 MTB_anc 468357 . G A 2429.83 . AB=0.0;AO=73;DP=73;QA=2733;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2733:-246.179,-21.9752,0.0 MTB_anc 481254 . TGCG T 1345.25 . AB=0.0;AO=42;DP=42;QA=1535;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:42:0:0:42:1535:-138.431,-12.6433,0.0 MTB_anc 482418 . C T 2228.11 . AB=0.0;AO=67;DP=67;QA=2518;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2518:-226.839,-20.169,0.0 MTB_anc 483935 . G T 2037.74 . AB=0.0;AO=64;DP=64;QA=2322;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:2322:-209.209,-19.2659,0.0 MTB_anc 491742 . C T 2737.69 . AB=0.0;AO=82;DP=82;QA=3077;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:3077:-277.116,-24.6845,0.0 MTB_anc 492150 . C G 2359.99 . AB=0.0;AO=71;DP=71;QA=2656;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2656:-239.252,-21.3731,0.0 MTB_anc 498531 . G A 2350.68 . AB=0.0;AO=72;DP=72;QA=2673;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2673:-240.78,-21.6742,0.0 MTB_anc 505974 . A G 2419.34 . AB=0.0;AO=73;DP=73;QA=2725;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2725:-245.46,-21.9752,0.0 MTB_anc 506386 . T C 3149.14 . AB=0.0;AO=95;DP=96;QA=3567;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:1:38:95:3567:-317.39,-25.1016,0.0 MTB_anc 514657 . G T 2996.3 . AB=0.0;AO=91;DP=91;QA=3378;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:3378:-304.184,-27.3937,0.0 MTB_anc 517358 . C T 2610.24 . AB=0.0;AO=79;DP=79;QA=2947;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2947:-265.422,-23.7814,0.0 MTB_anc 517411 . G A 2894.49 . AB=0.0;AO=87;DP=87;QA=3260;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3260:-293.576,-26.1896,0.0 MTB_anc 519185 . G T 2658.18 . AB=0.0;AO=81;DP=81;QA=3008;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3008:-270.914,-24.3834,0.0 MTB_anc 522081 . G A 3451.48 . AB=0.0;AO=104;DP=105;QA=3882;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:105:0:0:104:3882:-349.25,-31.3071,0.0 MTB_anc 524891 . A C 2914.32 . AB=0.0;AO=88;DP=88;QA=3287;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:3287:-296.006,-26.4906,0.0 MTB_anc 527316 . G C 2389.17 . AB=0.0;AO=72;DP=72;QA=2702;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2702:-243.391,-21.6742,0.0 MTB_anc 528354 . A C 2971.3 . AB=0.0;AO=89;DP=89;QA=3338;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:3338:-300.591,-26.7917,0.0 MTB_anc 530353 . G A 2855.14 . AB=0.0;AO=85;DP=85;QA=3215;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3215:-289.525,-25.5876,0.0 MTB_anc 534427 . A T 2780.13 . AB=0.0;AO=83;DP=83;QA=3130;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3130:-281.882,-24.9855,0.0 MTB_anc 542900 . C T 3391.17 . AB=0.0;AO=102;DP=102;QA=3810;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:102:0:0:102:3810:-343.045,-30.7051,0.0 MTB_anc 546357 . G A 2191.38 . AB=0.0;AO=66;DP=66;QA=2479;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2479:-223.334,-19.868,0.0 MTB_anc 555991 . G A 2729.99 . AB=0.0;AO=82;DP=82;QA=3078;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:3078:-277.207,-24.6845,0.0 MTB_anc 565404 . T G 2217.79 . AB=0.0;AO=66;DP=66;QA=2497;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2497:-224.95,-19.868,0.0 MTB_anc 565655 . G A 2957.2 . AB=0.0;AO=89;DP=89;QA=3341;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:3341:-300.862,-26.7917,0.0 MTB_anc 573384 . G T 2869.36 . AB=0.0;AO=86;DP=86;QA=3229;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3229:-290.786,-25.8886,0.0 MTB_anc 575221 . C T 2666.27 . AB=0.0;AO=81;DP=82;QA=3031;QR=33;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:1:33:81:3031:-269.679,-21.3853,0.0 MTB_anc 584171 . C T 2902.57 . AB=0.0;AO=87;DP=87;QA=3275;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3275:-294.924,-26.1896,0.0 MTB_anc 584511 . T G 2302.56 . AB=0.0;AO=69;DP=69;QA=2597;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2597:-233.946,-20.7711,0.0 MTB_anc 589290 . C CG 1908.09 . AB=0.0;AO=58;DP=59;QA=2165;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:58:2165:-194.716,-17.4597,0.0 MTB_anc 590763 . C G 2395.06 . AB=0.0;AO=72;DP=72;QA=2711;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2711:-244.199,-21.6742,0.0 MTB_anc 595374 . T C 2485.02 . AB=0.0;AO=76;DP=77;QA=2834;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:38:76:2834:-251.466,-19.382,0.0 MTB_anc 596097 . C T 2687.04 . AB=0.0;AO=82;DP=83;QA=3060;QR=36;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:1:36:82:3060:-271.992,-21.3872,0.0 MTB_anc 599868 . G A 2363.22 . 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AB=0.0;AO=73;DP=73;QA=2740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2740:-246.808,-21.9752,0.0 MTB_anc 1281771 . C T 2061.44 . AB=0.0;AO=63;DP=63;QA=2345;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:2345:-211.284,-18.9649,0.0 MTB_anc 1287112 . C T 3141.74 . AB=0.0;AO=94;DP=95;QA=3534;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:94:3534:-317.88,-28.2968,0.0 MTB_anc 1287291 . C G 2728.4 . AB=0.0;AO=82;DP=82;QA=3076;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:3076:-277.027,-24.6845,0.0 MTB_anc 1306259 . G A 2160.83 . AB=0.0;AO=65;DP=65;QA=2440;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:2440:-219.826,-19.567,0.0 MTB_anc 1310316 . T C 3308.66 . AB=0.0;AO=99;DP=99;QA=3713;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:3713:-334.319,-29.802,0.0 MTB_anc 1311932 . G A 2346.83 . AB=0.0;AO=71;DP=71;QA=2640;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2640:-237.816,-21.3731,0.0 MTB_anc 1320675 . G A 2831.24 . 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AB=0.0;AO=88;DP=88;QA=3292;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:3292:-296.455,-26.4906,0.0 MTB_anc 1600685 . T C 2139.98 . AB=0.0;AO=65;DP=65;QA=2410;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:2410:-217.132,-19.567,0.0 MTB_anc 1605343 . C A 2383.37 . AB=0.0;AO=72;DP=72;QA=2690;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2690:-242.307,-21.6742,0.0 MTB_anc 1608276 . C A 2029.31 . AB=0.0;AO=62;DP=62;QA=2301;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:2301:-207.325,-18.6639,0.0 MTB_anc 1611283 . C T 2537.47 . AB=0.0;AO=77;DP=77;QA=2862;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2862:-257.78,-23.1793,0.0 MTB_anc 1627351 . C T 3098.47 . AB=0.0;AO=93;DP=93;QA=3486;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:3486:-313.903,-27.9958,0.0 MTB_anc 1635607 . C T 2369.24 . AB=0.0;AO=72;DP=73;QA=2694;QR=33;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:1:33:72:2694:-239.368,-18.6761,0.0 MTB_anc 1638364 . T C 1042.55 . AB=0.0;AO=34;DP=34;QA=1278;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:34:0:0:34:1278:-115.317,-10.235,0.0 MTB_anc 1639418 . G A 2582.87 . AB=0.0;AO=78;DP=78;QA=2911;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2911:-262.187,-23.4803,0.0 MTB_anc 1639643 . C T 2985.02 . AB=0.0;AO=90;DP=90;QA=3358;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:3358:-302.393,-27.0927,0.0 MTB_anc 1640442 . T C 2886.46 . AB=0.0;AO=86;DP=86;QA=3244;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3244:-292.135,-25.8886,0.0 MTB_anc 1646940 . C T 2574.91 . AB=0.0;AO=78;DP=78;QA=2911;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2911:-262.19,-23.4803,0.0 MTB_anc 1659994 . T C 2413.33 . AB=0.0;AO=73;DP=73;QA=2737;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2737:-246.538,-21.9752,0.0 MTB_anc 1688300 . C T 3133.72 . AB=0.0;AO=95;DP=95;QA=3517;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:3517:-316.697,-28.5979,0.0 MTB_anc 1694547 . C A 2211.85 . AB=0.0;AO=67;DP=67;QA=2493;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2493:-224.591,-20.169,0.0 MTB_anc 1695674 . A G 2258.79 . AB=0.0;AO=68;DP=68;QA=2542;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2542:-229.002,-20.47,0.0 MTB_anc 1699849 . A G 2449.46 . AB=0.0;AO=73;DP=73;QA=2758;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2758:-248.425,-21.9752,0.0 MTB_anc 1706746 . A C 2226 . AB=0.0;AO=67;DP=67;QA=2515;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2515:-226.571,-20.169,0.0 MTB_anc 1707731 . A G 2243.77 . AB=0.0;AO=68;DP=68;QA=2546;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2546:-229.359,-20.47,0.0 MTB_anc 1709432 . T C 3132.85 . AB=0.0;AO=94;DP=94;QA=3523;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:3523:-317.23,-28.2968,0.0 MTB_anc 1711676 . A C 2458.82 . AB=0.0;AO=74;DP=74;QA=2770;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2770:-249.506,-22.2762,0.0 MTB_anc 1713192 . G A 1820.52 . AB=0.0;AO=57;DP=58;QA=2109;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:1:38:57:2109:-186.261,-13.6625,0.0 MTB_anc 1715531 . G C 2377.81 . AB=0.0;AO=72;DP=72;QA=2679;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2679:-241.319,-21.6742,0.0 MTB_anc 1716472 . G A 2998.25 . AB=0.0;AO=90;DP=90;QA=3371;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:3371:-303.561,-27.0927,0.0 MTB_anc 1719391 . T C 2416.55 . AB=0.0;AO=73;DP=73;QA=2738;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2738:-246.629,-21.9752,0.0 MTB_anc 1719996 . C T 2478.14 . AB=0.0;AO=74;DP=74;QA=2791;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2791:-251.393,-22.2762,0.0 MTB_anc 1726816 . T G 3484.07 . AB=0.0;AO=104;DP=104;QA=3909;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:104:0:0:104:3909:-351.945,-31.3071,0.0 MTB_anc 1753519 . G GC 1822.65 . AB=0.0;AO=56;DP=57;QA=2071;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:56:2071:-186.328,-16.8577,0.0 MTB_anc 1760923 . C T 2266.5 . 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AB=0.0;AO=80;DP=80;QA=2968;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2968:-267.313,-24.0824,0.0 MTB_anc 2421816 . G A 2931.72 . AB=0.0;AO=89;DP=90;QA=3340;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:1:38:89:3340:-296.973,-23.2954,0.0 MTB_anc 2424864 . G A 2845.9 . AB=0.0;AO=85;DP=85;QA=3202;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3202:-288.358,-25.5876,0.0 MTB_anc 2425471 . C T 2675.97 . AB=0.0;AO=81;DP=81;QA=3012;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3012:-271.276,-24.3834,0.0 MTB_anc 2429448 . T G 2543.65 . AB=0.0;AO=76;DP=76;QA=2863;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2863:-257.869,-22.8783,0.0 MTB_anc 2436936 . G A 3003 . AB=0.0;AO=90;DP=90;QA=3375;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:3375:-303.921,-27.0927,0.0 MTB_anc 2437259 . T G 2708.07 . AB=0.0;AO=81;DP=81;QA=3043;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3043:-274.061,-24.3834,0.0 MTB_anc 2447539 . G A 1893.3 . AB=0.0;AO=57;DP=57;QA=2139;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:2139:-192.755,-17.1587,0.0 MTB_anc 2448458 . T C 2243.32 . AB=0.0;AO=68;DP=68;QA=2535;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2535:-228.367,-20.47,0.0 MTB_anc 2449295 . A G 2505.85 . AB=0.0;AO=75;DP=75;QA=2820;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2820:-254.002,-22.5773,0.0 MTB_anc 2455836 . G A 2082.85 . AB=0.0;AO=63;DP=63;QA=2353;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:63:0:0:63:2353:-212.002,-18.9649,0.0 MTB_anc 2463195 . T C 1672.31 . AB=0.0;AO=51;DP=51;QA=1892;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:51:1892:-170.541,-15.3525,0.0 MTB_anc 2467937 . G A 2570.25 . AB=0.0;AO=77;DP=77;QA=2906;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2906:-261.733,-23.1793,0.0 MTB_anc 2470591 . C A 1880.69 . AB=0.0;AO=58;DP=58;QA=2129;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:2129:-191.86,-17.4597,0.0 MTB_anc 2472956 . C T 2538.31 . AB=0.0;AO=77;DP=77;QA=2875;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2875:-258.951,-23.1793,0.0 MTB_anc 2487707 . C T 2475.97 . AB=0.0;AO=74;DP=74;QA=2786;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2786:-250.943,-22.2762,0.0 MTB_anc 2495500 . C T 2950.51 . AB=0.0;AO=89;DP=89;QA=3320;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:3320:-298.976,-26.7917,0.0 MTB_anc 2496830 . G A 2292.78 . AB=0.0;AO=69;DP=69;QA=2585;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2585:-232.868,-20.7711,0.0 MTB_anc 2501148 . C T 2627.16 . AB=0.0;AO=79;DP=79;QA=2969;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2969:-267.404,-23.7814,0.0 MTB_anc 2511712 . T G 2771.39 . AB=0.0;AO=84;DP=84;QA=3122;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:3122:-281.166,-25.2865,0.0 MTB_anc 2516567 . C G 2617.31 . AB=0.0;AO=79;DP=79;QA=2958;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2958:-266.414,-23.7814,0.0 MTB_anc 2518132 . T C 2441.55 . AB=0.0;AO=73;DP=73;QA=2745;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2745:-247.257,-21.9752,0.0 MTB_anc 2523205 . G GCGC 1333.66 . AB=0.0;AO=42;DP=43;QA=1523;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:42:1523:-137.022,-12.6433,0.0 MTB_anc 2525722 . CG C 2611.37 . AB=0.0;AO=80;DP=80;QA=2949;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2949:-265.607,-24.0824,0.0 MTB_anc 2526974 . C T 2404.85 . AB=0.0;AO=72;DP=72;QA=2704;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2704:-243.57,-21.6742,0.0 MTB_anc 2534561 . CGG C 2234.28 . AB=0.0;AO=68;DP=68;QA=2525;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2525:-227.415,-20.47,0.0 MTB_anc 2562783 . C T 2331.1 . AB=0.0;AO=70;DP=70;QA=2623;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2623:-236.287,-21.0721,0.0 MTB_anc 2563958 . C A 2420.28 . AB=0.0;AO=73;DP=73;QA=2735;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2735:-246.358,-21.9752,0.0 MTB_anc 2566768 . G A 2837 . AB=0.0;AO=85;DP=85;QA=3186;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3186:-286.92,-25.5876,0.0 MTB_anc 2577246 . G A 1572.35 . AB=0.0;AO=48;DP=48;QA=1779;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:48:0:0:48:1779:-160.378,-14.4494,0.0 MTB_anc 2578626 . G A 2361.46 . AB=0.0;AO=71;DP=71;QA=2663;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2663:-239.884,-21.3731,0.0 MTB_anc 2581109 . A C 2195.2 . AB=0.0;AO=66;DP=66;QA=2480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2480:-223.422,-19.868,0.0 MTB_anc 2589216 . C G 3175.8 . AB=0.0;AO=97;DP=98;QA=3612;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:1:38:97:3612:-321.44,-25.7037,0.0 MTB_anc 2604156 . T TCAGTGCCAA 868.295 . AB=0.0;AO=29;DP=32;QA=1068;QR=74;RO=2;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:32:2:74:29:1068:-89.4148,-2.64926,0.0 MTB_anc 2605293 . T G 2968.16 . AB=0.0;AO=89;DP=89;QA=3336;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:3336:-300.412,-26.7917,0.0 MTB_anc 2608117 . A C 3165.44 . AB=0.0;AO=96;DP=96;QA=3584;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:96:0:0:96:3584:-322.718,-28.8989,0.0 MTB_anc 2608488 . C T 2368.82 . AB=0.0;AO=72;DP=72;QA=2669;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2669:-240.421,-21.6742,0.0 MTB_anc 2619271 . C T 2543.27 . AB=0.0;AO=77;DP=77;QA=2873;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2873:-258.766,-23.1793,0.0 MTB_anc 2628914 . A G 2625.01 . AB=0.0;AO=79;DP=79;QA=2952;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2952:-265.872,-23.7814,0.0 MTB_anc 2631641 . G T 3083.72 . AB=0.0;AO=92;DP=92;QA=3481;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:92:0:0:92:3481:-313.448,-27.6948,0.0 MTB_anc 2632500 . G A 2311.34 . AB=0.0;AO=69;DP=69;QA=2604;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2604:-234.574,-20.7711,0.0 MTB_anc 2637541 . T C 2291.02 . AB=0.0;AO=69;DP=69;QA=2590;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2590:-233.317,-20.7711,0.0 MTB_anc 2641840 . G A 2866.93 . AB=0.0;AO=86;DP=86;QA=3244;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3244:-292.135,-25.8886,0.0 MTB_anc 2642383 . T C 2505.86 . AB=0.0;AO=75;DP=75;QA=2830;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2830:-254.899,-22.5773,0.0 MTB_anc 2662958 . G A 2782.16 . AB=0.0;AO=85;DP=86;QA=3159;QR=36;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:1:36:85:3159:-280.897,-22.2903,0.0 MTB_anc 2671091 . G T 2118.1 . AB=0.0;AO=64;DP=65;QA=2421;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:1:38:64:2421:-214.317,-15.7697,0.0 MTB_anc 2674629 . C T 2801.43 . AB=0.0;AO=85;DP=85;QA=3160;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3160:-284.586,-25.5876,0.0 MTB_anc 2691713 . C T 2642.4 . AB=0.0;AO=79;DP=79;QA=2973;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2973:-267.763,-23.7814,0.0 MTB_anc 2709795 . G A 2554.73 . AB=0.0;AO=77;DP=77;QA=2873;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2873:-258.766,-23.1793,0.0 MTB_anc 2712913 . A C 2492.93 . AB=0.0;AO=75;DP=75;QA=2811;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2811:-253.195,-22.5773,0.0 MTB_anc 2723506 . C T 2750.1 . AB=0.0;AO=83;DP=83;QA=3091;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3091:-278.381,-24.9855,0.0 MTB_anc 2735824 . C G 3028.51 . AB=0.0;AO=90;DP=90;QA=3403;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:3403:-306.434,-27.0927,0.0 MTB_anc 2737572 . A C 2753.04 . AB=0.0;AO=82;DP=82;QA=3099;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:3099:-279.093,-24.6845,0.0 MTB_anc 2739132 . C G 2873.07 . AB=0.0;AO=86;DP=86;QA=3234;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3234:-291.237,-25.8886,0.0 MTB_anc 2740693 . C T 2040.09 . AB=0.0;AO=62;DP=62;QA=2304;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:2304:-207.591,-18.6639,0.0 MTB_anc 2761878 . C T 2594.07 . AB=0.0;AO=79;DP=79;QA=2954;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2954:-266.057,-23.7814,0.0 MTB_anc 2764939 . A G 3137.77 . 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AB=0.0;AO=78;DP=78;QA=2878;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2878:-259.216,-23.4803,0.0 MTB_anc 2858669 . T G 2256.21 . AB=0.0;AO=68;DP=68;QA=2549;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2549:-229.63,-20.47,0.0 MTB_anc 2868358 . G A 2858.05 . AB=0.0;AO=86;DP=86;QA=3222;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3222:-290.16,-25.8886,0.0 MTB_anc 2868925 . G A 3004.63 . AB=0.0;AO=90;DP=90;QA=3376;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:3376:-304.007,-27.0927,0.0 MTB_anc 2870386 . T C 2673.79 . AB=0.0;AO=81;DP=81;QA=3041;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3041:-273.878,-24.3834,0.0 MTB_anc 2876703 . G C 2868.2 . AB=0.0;AO=86;DP=86;QA=3225;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3225:-290.43,-25.8886,0.0 MTB_anc 2878980 . T C 2360.3 . AB=0.0;AO=71;DP=71;QA=2662;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2662:-239.793,-21.3731,0.0 MTB_anc 2881597 . AG A 2298.81 . AB=0.0;AO=69;DP=69;QA=2587;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2587:-233.047,-20.7711,0.0 MTB_anc 2886570 . G A 2903.87 . AB=0.0;AO=87;DP=87;QA=3266;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3266:-294.116,-26.1896,0.0 MTB_anc 2897871 . G A 2933.18 . AB=0.0;AO=87;DP=87;QA=3296;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3296:-296.809,-26.1896,0.0 MTB_anc 2905505 . G A 1838.71 . AB=0.0;AO=56;DP=56;QA=2098;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:56:0:0:56:2098:-189.068,-16.8577,0.0 MTB_anc 2925962 . C T 2136.98 . AB=0.0;AO=64;DP=64;QA=2408;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:2408:-216.948,-19.2659,0.0 MTB_anc 2926654 . C G 2501.95 . AB=0.0;AO=75;DP=75;QA=2819;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2819:-253.91,-22.5773,0.0 MTB_anc 2927511 . T G 2815.87 . AB=0.0;AO=85;DP=85;QA=3174;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3174:-285.842,-25.5876,0.0 MTB_anc 2945342 . G A 3009.63 . AB=0.0;AO=90;DP=90;QA=3379;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:3379:-304.278,-27.0927,0.0 MTB_anc 2953307 . T G 2420.03 . AB=0.0;AO=73;DP=73;QA=2744;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2744:-247.168,-21.9752,0.0 MTB_anc 2955233 . T C 3113.95 . AB=0.0;AO=93;DP=93;QA=3496;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:3496:-314.801,-27.9958,0.0 MTB_anc 2959324 . G A 2245.1 . AB=0.0;AO=68;DP=68;QA=2545;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2545:-229.271,-20.47,0.0 MTB_anc 2964281 . T C 2478.75 . AB=0.0;AO=75;DP=75;QA=2796;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2796:-251.847,-22.5773,0.0 MTB_anc 2970017 . CGA GTG 1806.33 . AB=0.0;AO=55;DP=55;QA=2067;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:2067:-185.948,-16.5567,0.0 MTB_anc 2970820 . A G 2982.4 . AB=0.0;AO=89;DP=89;QA=3364;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:3364:-302.926,-26.7917,0.0 MTB_anc 2971122 . C T 2761.17 . AB=0.0;AO=83;DP=83;QA=3115;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3115:-280.533,-24.9855,0.0 MTB_anc 2980970 . C A 2426.86 . AB=0.0;AO=73;DP=73;QA=2736;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2736:-246.449,-21.9752,0.0 MTB_anc 2983886 . TG T 2741.5 . AB=0.0;AO=84;DP=86;QA=3114;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:84:3114:-279.94,-25.2865,0.0 MTB_anc 2985216 . A G 2131.41 . AB=0.0;AO=64;DP=64;QA=2409;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:2409:-217.038,-19.2659,0.0 MTB_anc 2988630 . G C 3319.94 . AB=0.0;AO=99;DP=99;QA=3725;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:3725:-335.395,-29.802,0.0 MTB_anc 2994187 . C T 2842.11 . AB=0.0;AO=86;DP=86;QA=3200;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3200:-288.183,-25.8886,0.0 MTB_anc 3000362 . C T 2548.63 . AB=0.0;AO=77;DP=77;QA=2901;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2901:-261.288,-23.1793,0.0 MTB_anc 3003115 . G C 2549.86 . AB=0.0;AO=77;DP=77;QA=2866;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2866:-258.145,-23.1793,0.0 MTB_anc 3010420 . G A 2327.57 . AB=0.0;AO=70;DP=70;QA=2624;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2624:-236.376,-21.0721,0.0 MTB_anc 3021232 . A C 3136.45 . AB=0.0;AO=94;DP=94;QA=3527;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:94:0:0:94:3527:-317.59,-28.2968,0.0 MTB_anc 3027606 . G C 1994.85 . AB=0.0;AO=60;DP=60;QA=2250;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:2250:-202.737,-18.0618,0.0 MTB_anc 3027798 . C T 2762.02 . AB=0.0;AO=83;DP=83;QA=3111;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3111:-280.176,-24.9855,0.0 MTB_anc 3031168 . G A 2348.56 . AB=0.0;AO=70;DP=70;QA=2643;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2643:-238.081,-21.0721,0.0 MTB_anc 3037377 . C T 2522.07 . AB=0.0;AO=76;DP=76;QA=2841;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2841:-255.892,-22.8783,0.0 MTB_anc 3037917 . G A 2299.61 . AB=0.0;AO=69;DP=69;QA=2599;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2599:-234.126,-20.7711,0.0 MTB_anc 3047931 . G A 2210.17 . AB=0.0;AO=67;DP=67;QA=2494;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2494:-224.68,-20.169,0.0 MTB_anc 3052514 . C T 2529.65 . AB=0.0;AO=77;DP=77;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2850:-256.705,-23.1793,0.0 MTB_anc 3053688 . C A 2679.78 . AB=0.0;AO=80;DP=80;QA=3015;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:3015:-271.539,-24.0824,0.0 MTB_anc 3062139 . A G 2593.67 . AB=0.0;AO=78;DP=78;QA=2922;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2922:-263.176,-23.4803,0.0 MTB_anc 3063694 . G A 2841.76 . AB=0.0;AO=86;DP=86;QA=3196;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3196:-287.826,-25.8886,0.0 MTB_anc 3069167 . G A 1996.75 . AB=0.0;AO=60;DP=60;QA=2255;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:2255:-203.186,-18.0618,0.0 MTB_anc 3069805 . C G 2437.08 . AB=0.0;AO=74;DP=74;QA=2749;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2749:-247.615,-22.2762,0.0 MTB_anc 3088614 . A G 2637.84 . AB=0.0;AO=80;DP=81;QA=2984;QR=27;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:1:27:80:2984:-266.055,-21.6836,0.0 MTB_anc 3088625 . G A 2364.14 . AB=0.0;AO=71;DP=71;QA=2659;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2659:-239.523,-21.3731,0.0 MTB_anc 3096995 . G GT 2191.89 . AB=0.0;AO=67;DP=71;QA=2474;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:67:2474:-222.544,-20.169,0.0 MTB_anc 3097078 . G C 2898.38 . AB=0.0;AO=87;DP=87;QA=3269;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3269:-294.382,-26.1896,0.0 MTB_anc 3097404 . C T 2791.14 . AB=0.0;AO=85;DP=85;QA=3161;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3161:-284.67,-25.5876,0.0 MTB_anc 3104189 . G A 2450.59 . AB=0.0;AO=74;DP=75;QA=2791;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:1:38:74:2791:-247.595,-18.78,0.0 MTB_anc 3105144 . A C 2329.03 . AB=0.0;AO=70;DP=70;QA=2635;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2635:-237.364,-21.0721,0.0 MTB_anc 3118449 . G A 2071.64 . AB=0.0;AO=62;DP=62;QA=2340;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:2340:-210.831,-18.6639,0.0 MTB_anc 3119513 . T C 2189.6 . AB=0.0;AO=68;DP=68;QA=2473;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2473:-222.792,-20.47,0.0 MTB_anc 3119737 . GGGTT CCGGA 1335.43 . AB=0.0;AO=41;DP=41;QA=1532;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:41:0:0:41:1532:-137.784,-12.3422,0.0 MTB_anc 3122943 . A G 1731.32 . AB=0.0;AO=54;DP=54;QA=2008;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:54:0:0:54:2008:-180.973,-16.2556,0.0 MTB_anc 3122949 . CCT TCA 1859.51 . AB=0.0;AO=57;DP=57;QA=2120;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:2120:-190.672,-17.1587,0.0 MTB_anc 3131473 . C CGGCGATGTA 1354.22 . AB=0.0;AO=43;DP=47;QA=1566;QR=37;RO=1;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:47:1:37:43:1566:-137.523,-9.91561,0.0 MTB_anc 3137237 . C T 2613.21 . AB=0.0;AO=79;DP=79;QA=2942;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2942:-264.974,-23.7814,0.0 MTB_anc 3139022 . G A 3153.72 . AB=0.0;AO=95;DP=95;QA=3568;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:95:0:0:95:3568:-321.277,-28.5979,0.0 MTB_anc 3143568 . G T 2539.48 . AB=0.0;AO=77;DP=77;QA=2867;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2867:-258.23,-23.1793,0.0 MTB_anc 3147376 . G A 2657.15 . AB=0.0;AO=80;DP=80;QA=3005;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:3005:-270.642,-24.0824,0.0 MTB_anc 3159936 . G A 2773.42 . AB=0.0;AO=83;DP=83;QA=3120;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3120:-280.983,-24.9855,0.0 MTB_anc 3168137 . C T 1806.46 . AB=0.0;AO=55;DP=55;QA=2048;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:55:0:0:55:2048:-184.572,-16.5567,0.0 MTB_anc 3170166 . C A 2971.23 . AB=0.0;AO=89;DP=89;QA=3342;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:3342:-300.952,-26.7917,0.0 MTB_anc 3174496 . G A 3524.12 . AB=0.0;AO=106;DP=106;QA=3963;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3963:-356.802,-31.9092,0.0 MTB_anc 3180988 . A C 2504.39 . AB=0.0;AO=76;DP=77;QA=2848;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:38:76:2848:-252.724,-19.382,0.0 MTB_anc 3188769 . G A 2846.08 . AB=0.0;AO=86;DP=86;QA=3208;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3208:-288.901,-25.8886,0.0 MTB_anc 3189242 . G A 2655.43 . AB=0.0;AO=80;DP=80;QA=2985;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2985:-268.846,-24.0824,0.0 MTB_anc 3189580 . C T 2850.1 . AB=0.0;AO=86;DP=86;QA=3215;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3215:-289.531,-25.8886,0.0 MTB_anc 3190145 . TC T 2920.79 . AB=0.0;AO=89;DP=89;QA=3297;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:3297:-296.911,-26.7917,0.0 MTB_anc 3193602 . C T 2962.21 . AB=0.0;AO=89;DP=89;QA=3335;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:89:0:0:89:3335:-300.323,-26.7917,0.0 MTB_anc 3200304 . G A 2763.04 . AB=0.0;AO=83;DP=83;QA=3127;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3127:-281.611,-24.9855,0.0 MTB_anc 3244414 . G A 2328.21 . AB=0.0;AO=70;DP=70;QA=2622;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2622:-236.194,-21.0721,0.0 MTB_anc 3266030 . G A 2413.34 . AB=0.0;AO=73;DP=73;QA=2722;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2722:-245.191,-21.9752,0.0 MTB_anc 3269805 . A C 2792.68 . AB=0.0;AO=84;DP=84;QA=3145;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:3145:-283.231,-25.2865,0.0 MTB_anc 3271037 . G A 2926.85 . AB=0.0;AO=88;DP=88;QA=3293;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:3293:-296.546,-26.4906,0.0 MTB_anc 3273138 . G C 2374.72 . AB=0.0;AO=71;DP=71;QA=2674;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2674:-240.871,-21.3731,0.0 MTB_anc 3281659 . C T 2872.63 . AB=0.0;AO=86;DP=86;QA=3234;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3234:-291.236,-25.8886,0.0 MTB_anc 3293010 . G A 2596.91 . AB=0.0;AO=79;DP=80;QA=2957;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:1:38:79:2957:-262.529,-20.2851,0.0 MTB_anc 3296721 . G C 2168.42 . AB=0.0;AO=65;DP=65;QA=2452;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:2452:-220.904,-19.567,0.0 MTB_anc 3302683 . T C 2554.87 . AB=0.0;AO=76;DP=76;QA=2875;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2875:-258.946,-22.8783,0.0 MTB_anc 3311119 . C G 2284.88 . AB=0.0;AO=69;DP=69;QA=2579;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2579:-232.329,-20.7711,0.0 MTB_anc 3311442 . G A 2435.84 . AB=0.0;AO=74;DP=74;QA=2757;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2757:-248.341,-22.2762,0.0 MTB_anc 3313181 . C T 2569.18 . AB=0.0;AO=77;DP=77;QA=2892;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2892:-260.478,-23.1793,0.0 MTB_anc 3314412 . G A 2368.92 . AB=0.0;AO=71;DP=71;QA=2667;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2667:-240.242,-21.3731,0.0 MTB_anc 3316498 . G A 2216.99 . AB=0.0;AO=67;DP=67;QA=2505;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2505:-225.67,-20.169,0.0 MTB_anc 3326554 . C A 2598.73 . AB=0.0;AO=78;DP=78;QA=2943;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2943:-265.063,-23.4803,0.0 MTB_anc 3347480 . G A 2527.47 . AB=0.0;AO=76;DP=76;QA=2847;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2847:-256.432,-22.8783,0.0 MTB_anc 3349564 . A C 2528.35 . AB=0.0;AO=76;DP=76;QA=2843;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2843:-256.067,-22.8783,0.0 MTB_anc 3352932 . G C 2389.76 . AB=0.0;AO=72;DP=72;QA=2696;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2696:-242.85,-21.6742,0.0 MTB_anc 3369382 . G A 2531.93 . AB=0.0;AO=76;DP=76;QA=2854;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2854:-257.06,-22.8783,0.0 MTB_anc 3369869 . T G 2170.5 . AB=0.0;AO=66;DP=66;QA=2451;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2451:-220.819,-19.868,0.0 MTB_anc 3371260 . C T 2612.38 . AB=0.0;AO=79;DP=79;QA=2946;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2946:-265.331,-23.7814,0.0 MTB_anc 3376685 . G A 2599.19 . AB=0.0;AO=78;DP=78;QA=2939;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2939:-264.703,-23.4803,0.0 MTB_anc 3401501 . G A 2408.6 . AB=0.0;AO=73;DP=73;QA=2726;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2726:-245.546,-21.9752,0.0 MTB_anc 3401871 . G A 2494.06 . AB=0.0;AO=76;DP=77;QA=2839;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:38:76:2839:-251.916,-19.382,0.0 MTB_anc 3404376 . G C 2128.34 . AB=0.0;AO=64;DP=64;QA=2414;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:2414:-217.487,-19.2659,0.0 MTB_anc 3415332 . G A 2442.11 . AB=0.0;AO=74;DP=74;QA=2796;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2796:-251.842,-22.2762,0.0 MTB_anc 3419560 . C T 2667.23 . AB=0.0;AO=81;DP=81;QA=3000;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3000:-270.189,-24.3834,0.0 MTB_anc 3420825 . G A 3260.25 . AB=0.0;AO=98;DP=98;QA=3666;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:98:0:0:98:3666:-330.093,-29.5009,0.0 MTB_anc 3433011 . G A 2658.09 . AB=0.0;AO=80;DP=80;QA=2993;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2993:-269.564,-24.0824,0.0 MTB_anc 3440542 . G A 2548.23 . AB=0.0;AO=77;DP=77;QA=2883;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2883:-259.67,-23.1793,0.0 MTB_anc 3448608 . G A 2548.73 . AB=0.0;AO=78;DP=79;QA=2900;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:38:78:2900:-257.404,-19.9841,0.0 MTB_anc 3449655 . G A 2877.56 . AB=0.0;AO=86;DP=86;QA=3233;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3233:-291.146,-25.8886,0.0 MTB_anc 3450725 . C T 3292.87 . AB=0.0;AO=99;DP=99;QA=3705;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:99:0:0:99:3705:-333.6,-29.802,0.0 MTB_anc 3454263 . G C 2848.68 . AB=0.0;AO=86;DP=86;QA=3210;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:86:0:0:86:3210:-289.082,-25.8886,0.0 MTB_anc 3455686 . C G 2879.47 . AB=0.0;AO=87;DP=87;QA=3234;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3234:-291.241,-26.1896,0.0 MTB_anc 3457514 . C G 2628.83 . AB=0.0;AO=79;DP=79;QA=2965;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2965:-267.044,-23.7814,0.0 MTB_anc 3463451 . G C 2000.17 . AB=0.0;AO=61;DP=61;QA=2257;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:61:0:0:61:2257:-203.37,-18.3628,0.0 MTB_anc 3464629 . G A 2167.94 . AB=0.0;AO=65;DP=65;QA=2442;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:2442:-220.007,-19.567,0.0 MTB_anc 3467465 . G C 2412.47 . AB=0.0;AO=72;DP=72;QA=2717;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2717:-244.736,-21.6742,0.0 MTB_anc 3473996 . G GA 2561.1 . AB=0.0;AO=77;DP=78;QA=2893;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:77:2893:-260.189,-23.1793,0.0 MTB_anc 3475159 . G A 2219.85 . AB=0.0;AO=66;DP=66;QA=2499;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2499:-225.13,-19.868,0.0 MTB_anc 3480474 . A G 2778.94 . AB=0.0;AO=84;DP=84;QA=3150;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:3150:-283.683,-25.2865,0.0 MTB_anc 3480789 . C T 2192.34 . AB=0.0;AO=66;DP=66;QA=2480;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2480:-223.423,-19.868,0.0 MTB_anc 3498418 . G A 2577.48 . AB=0.0;AO=77;DP=77;QA=2899;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2899:-261.108,-23.1793,0.0 MTB_anc 3505005 . C A 2405.13 . AB=0.0;AO=72;DP=72;QA=2715;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:72:0:0:72:2715:-244.556,-21.6742,0.0 MTB_anc 3509091 . C G 2631.83 . AB=0.0;AO=80;DP=80;QA=2978;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2978:-268.216,-24.0824,0.0 MTB_anc 3520572 . CG C 2418.52 . AB=0.0;AO=73;DP=75;QA=2754;QR=38;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:75:1:38:73:2754:-244.239,-18.8888,0.0 MTB_anc 3521044 . G A 2522.72 . AB=0.0;AO=77;DP=77;QA=2850;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2850:-256.707,-23.1793,0.0 MTB_anc 3530955 . G C 3040.5 . AB=0.0;AO=91;DP=91;QA=3414;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:3414:-307.426,-27.3937,0.0 MTB_anc 3534578 . G A 2467.04 . AB=0.0;AO=74;DP=74;QA=2798;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2798:-252.022,-22.2762,0.0 MTB_anc 3555699 . G A 2602.11 . AB=0.0;AO=78;DP=78;QA=2925;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:78:0:0:78:2925:-263.447,-23.4803,0.0 MTB_anc 3560645 . T C 2539.28 . AB=0.0;AO=77;DP=77;QA=2856;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2856:-257.242,-23.1793,0.0 MTB_anc 3566943 . G A 2682.79 . AB=0.0;AO=81;DP=81;QA=3017;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3017:-271.724,-24.3834,0.0 MTB_anc 3568779 . A G 2424.02 . AB=0.0;AO=73;DP=73;QA=2740;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2740:-246.808,-21.9752,0.0 MTB_anc 3571834 . G T 2788.22 . AB=0.0;AO=83;DP=83;QA=3133;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3133:-282.151,-24.9855,0.0 MTB_anc 3573636 . C T 2345.37 . AB=0.0;AO=71;DP=71;QA=2650;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2650:-238.716,-21.3731,0.0 MTB_anc 3575106 . A G 2203.03 . AB=0.0;AO=67;DP=67;QA=2482;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2482:-223.607,-20.169,0.0 MTB_anc 3577958 . G A 2789.1 . AB=0.0;AO=85;DP=85;QA=3144;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3144:-283.147,-25.5876,0.0 MTB_anc 3580636 . CT C 2467.34 . AB=0.0;AO=76;DP=76;QA=2807;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2807:-252.839,-22.8783,0.0 MTB_anc 3585610 . A G 2739.07 . AB=0.0;AO=82;DP=82;QA=3079;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:3079:-277.296,-24.6845,0.0 MTB_anc 3590686 . G GC 1601.46 . AB=0.0;AO=50;DP=51;QA=1870;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:51:0:0:50:1870:-168.23,-15.0515,0.0 MTB_anc 3591211 . G A 2236 . AB=0.0;AO=67;DP=67;QA=2527;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2527:-227.649,-20.169,0.0 MTB_anc 3596273 . TCCG T 2061.33 . AB=0.0;AO=64;DP=67;QA=2374;QR=38;RO=1;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:67:1:38:64:2374:-210.154,-16.1195,0.0 MTB_anc 3608514 . G A 2814.04 . AB=0.0;AO=85;DP=85;QA=3169;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3169:-285.394,-25.5876,0.0 MTB_anc 3612665 . A G 2201.45 . AB=0.0;AO=66;DP=66;QA=2482;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2482:-223.603,-19.868,0.0 MTB_anc 3621423 . G A 2802.03 . AB=0.0;AO=84;DP=84;QA=3174;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:0:0:84:3174:-285.838,-25.2865,0.0 MTB_anc 3624486 . C T 2482.92 . AB=0.0;AO=75;DP=75;QA=2795;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2795:-251.755,-22.5773,0.0 MTB_anc 3638093 . A G 2539.03 . AB=0.0;AO=78;DP=79;QA=2917;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:1:38:78:2917:-258.931,-19.9841,0.0 MTB_anc 3647041 . G A 2477.12 . AB=0.0;AO=75;DP=75;QA=2802;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2802:-252.387,-22.5773,0.0 MTB_anc 3652176 . C T 2701.85 . AB=0.0;AO=81;DP=81;QA=3047;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3047:-274.419,-24.3834,0.0 MTB_anc 3658266 . G C 2154.33 . AB=0.0;AO=65;DP=65;QA=2426;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:2426:-218.567,-19.567,0.0 MTB_anc 3670040 . T C 2820.01 . AB=0.0;AO=86;DP=87;QA=3213;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:1:38:86:3213:-285.554,-22.3923,0.0 MTB_anc 3679949 . G A 3204.78 . AB=0.0;AO=97;DP=97;QA=3600;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:97:0:0:97:3600:-324.153,-29.1999,0.0 MTB_anc 3681548 . C A 2715.48 . AB=0.0;AO=83;DP=84;QA=3105;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:84:1:38:83:3105:-275.841,-21.4893,0.0 MTB_anc 3690016 . G A 2188.13 . AB=0.0;AO=66;DP=66;QA=2466;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2466:-222.166,-19.868,0.0 MTB_anc 3693681 . C A 2626.73 . AB=0.0;AO=79;DP=79;QA=2958;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2958:-266.415,-23.7814,0.0 MTB_anc 3696181 . G A 2402.4 . 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AB=0.0;AO=91;DP=91;QA=3423;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:3423:-308.235,-27.3937,0.0 MTB_anc 4151855 . G A 2989.15 . AB=0.0;AO=90;DP=90;QA=3378;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:3378:-304.19,-27.0927,0.0 MTB_anc 4151996 . C T 2020.55 . AB=0.0;AO=62;DP=64;QA=2318;QR=48;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:2:48:62:2318:-204.295,-14.707,0.0 MTB_anc 4156239 . G A 2696.91 . AB=0.0;AO=81;DP=81;QA=3049;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3049:-274.596,-24.3834,0.0 MTB_anc 4156503 . T C 2329.05 . AB=0.0;AO=70;DP=70;QA=2621;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2621:-236.106,-21.0721,0.0 MTB_anc 4158361 . G A 2935.44 . AB=0.0;AO=88;DP=88;QA=3303;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:88:0:0:88:3303:-297.444,-26.4906,0.0 MTB_anc 4159195 . C T 2515.39 . AB=0.0;AO=77;DP=77;QA=2842;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2842:-255.983,-23.1793,0.0 MTB_anc 4168445 . GCGCGGACGGGAA G 1081.25 . AB=0.0;AO=34;DP=35;QA=1232;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:35:0:0:34:1232:-110.8,-10.235,0.0 MTB_anc 4179089 . T C 2660.8 . AB=0.0;AO=80;DP=80;QA=2991;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:80:0:0:80:2991:-269.383,-24.0824,0.0 MTB_anc 4190532 . C A 2388.1 . AB=0.0;AO=73;DP=73;QA=2690;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2690:-242.313,-21.9752,0.0 MTB_anc 4197137 . G GC 2006.34 . AB=0.0;AO=61;DP=62;QA=2271;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:61:2271:-204.298,-18.3628,0.0 MTB_anc 4197189 . G A 2006.98 . AB=0.0;AO=60;DP=60;QA=2267;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:60:0:0:60:2267:-204.265,-18.0618,0.0 MTB_anc 4198611 . CG C 2477.87 . AB=0.0;AO=75;DP=76;QA=2808;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:75:2808:-252.635,-22.5773,0.0 MTB_anc 4200220 . G A 2868.7 . AB=0.0;AO=87;DP=87;QA=3238;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:87:0:0:87:3238:-291.596,-26.1896,0.0 MTB_anc 4202383 . C A 2548.14 . AB=0.0;AO=76;DP=76;QA=2867;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2867:-258.228,-22.8783,0.0 MTB_anc 4204870 . A G 2745.5 . AB=0.0;AO=82;DP=82;QA=3100;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:82:0:0:82:3100:-279.182,-24.6845,0.0 MTB_anc 4205120 . G A 2688.16 . AB=0.0;AO=81;DP=81;QA=3023;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3023:-272.261,-24.3834,0.0 MTB_anc 4210664 . G A 2141.96 . AB=0.0;AO=67;DP=70;QA=2519;QR=114;RO=3;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:3:114:67:2519:-216.299,-10.4397,0.0 MTB_anc 4210876 . C T 2511.78 . AB=0.0;AO=76;DP=76;QA=2824;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:76:0:0:76:2824:-254.365,-22.8783,0.0 MTB_anc 4214747 . C T 2704.25 . AB=0.0;AO=81;DP=81;QA=3048;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3048:-274.509,-24.3834,0.0 MTB_anc 4215484 . C G 2782.4 . AB=0.0;AO=83;DP=83;QA=3127;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:83:0:0:83:3127:-281.611,-24.9855,0.0 MTB_anc 4216255 . G C 2452.08 . AB=0.0;AO=74;DP=74;QA=2762;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2762:-248.787,-22.2762,0.0 MTB_anc 4217557 . G A 2626.07 . AB=0.0;AO=79;DP=79;QA=2957;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2957:-266.326,-23.7814,0.0 MTB_anc 4220985 . G A 2776.6 . AB=0.0;AO=84;DP=85;QA=3146;QR=32;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:1:32:84:3146:-280.125,-22.3882,0.0 MTB_anc 4223172 . C T 1748.52 . AB=0.0;AO=53;DP=53;QA=1979;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1979:-178.365,-15.9546,0.0 MTB_anc 4223742 . G A 2842.7 . AB=0.0;AO=85;DP=85;QA=3193;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:85:0:0:85:3193:-287.551,-25.5876,0.0 MTB_anc 4232327 . G A 2365.25 . AB=0.0;AO=71;DP=71;QA=2664;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2664:-239.973,-21.3731,0.0 MTB_anc 4238963 . C T 2115.7 . AB=0.0;AO=64;DP=64;QA=2387;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:2387:-215.062,-19.2659,0.0 MTB_anc 4239438 . G A 3015.39 . AB=0.0;AO=91;DP=93;QA=3435;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:1:38:91:3435:-305.515,-24.2772,0.0 MTB_anc 4240671 . T C 3009.28 . AB=0.0;AO=91;DP=91;QA=3383;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:3383:-304.644,-27.3937,0.0 MTB_anc 4247646 . C A 3100.66 . AB=0.0;AO=93;DP=93;QA=3494;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:3494:-314.623,-27.9958,0.0 MTB_anc 4251297 . C G 1517.11 . AB=0.0;AO=46;DP=46;QA=1716;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:46:0:0:46:1716:-154.71,-13.8474,0.0 MTB_anc 4260490 . G A 2422.71 . AB=0.0;AO=73;DP=73;QA=2729;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2729:-245.82,-21.9752,0.0 MTB_anc 4261499 . A G 2298.67 . AB=0.0;AO=69;DP=69;QA=2596;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2596:-233.856,-20.7711,0.0 MTB_anc 4263279 . G A 2258.07 . AB=0.0;AO=68;DP=68;QA=2556;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:68:0:0:68:2556:-230.258,-20.47,0.0 MTB_anc 4269387 . G T 3096.19 . AB=0.0;AO=93;DP=93;QA=3497;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:93:0:0:93:3497:-314.891,-27.9958,0.0 MTB_anc 4269606 . G A 1872.81 . AB=0.0;AO=58;DP=58;QA=2135;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:2135:-192.392,-17.4597,0.0 MTB_anc 4287164 . G A 2164.34 . AB=0.0;AO=65;DP=65;QA=2443;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:65:0:0:65:2443:-220.096,-19.567,0.0 MTB_anc 4287361 . T C 1958.32 . AB=0.0;AO=59;DP=59;QA=2213;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:2213:-199.41,-17.7608,0.0 MTB_anc 4289953 . G A 2474.59 . AB=0.0;AO=74;DP=74;QA=2786;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2786:-250.945,-22.2762,0.0 MTB_anc 4290564 . T G 3448.42 . AB=0.0;AO=103;DP=103;QA=3869;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:103:0:0:103:3869:-348.349,-31.0061,0.0 MTB_anc 4290827 . G C 3535.66 . AB=0.0;AO=106;DP=106;QA=3986;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:106:0:0:106:3986:-358.871,-31.9092,0.0 MTB_anc 4291593 . G A 2468.66 . AB=0.0;AO=74;DP=74;QA=2795;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2795:-251.752,-22.2762,0.0 MTB_anc 4296015 . A G 2617.23 . AB=0.0;AO=79;DP=79;QA=2946;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:0:0:79:2946:-265.333,-23.7814,0.0 MTB_anc 4307886 . G A 2288.87 . AB=0.0;AO=70;DP=71;QA=2606;QR=33;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:1:33:70:2606:-231.455,-18.074,0.0 MTB_anc 4313128 . T C 2231.38 . AB=0.0;AO=67;DP=67;QA=2517;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:67:0:0:67:2517:-226.75,-20.169,0.0 MTB_anc 4314645 . G A 2011.65 . AB=0.0;AO=62;DP=62;QA=2281;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:62:0:0:62:2281:-205.526,-18.6639,0.0 MTB_anc 4316566 . G C 2712.81 . AB=0.0;AO=81;DP=81;QA=3049;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:81:0:0:81:3049:-274.598,-24.3834,0.0 MTB_anc 4323006 . A G 2185.79 . AB=0.0;AO=66;DP=66;QA=2471;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2471:-222.614,-19.868,0.0 MTB_anc 4327297 . C T 2433.39 . AB=0.0;AO=73;DP=73;QA=2743;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2743:-247.078,-21.9752,0.0 MTB_anc 4329782 . A G 1832.19 . AB=0.0;AO=56;DP=57;QA=2098;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:1:38:56:2098:-185.269,-13.3614,0.0 MTB_anc 4334425 . C G 2320.44 . AB=0.0;AO=70;DP=70;QA=2629;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2629:-236.826,-21.0721,0.0 MTB_anc 4336597 . A C 2105.18 . AB=0.0;AO=64;DP=64;QA=2378;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:2378:-214.253,-19.2659,0.0 MTB_anc 4338595 . GT G 2093.06 . AB=0.0;AO=64;DP=64;QA=2363;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:64:0:0:64:2363:-212.905,-19.2659,0.0 MTB_anc 4343048 . G C 2553.67 . AB=0.0;AO=77;DP=77;QA=2880;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:0:0:77:2880:-259.399,-23.1793,0.0 MTB_anc 4343679 . C T 2366.33 . AB=0.0;AO=71;DP=71;QA=2666;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:71:0:0:71:2666:-240.152,-21.3731,0.0 MTB_anc 4357597 . G C 3041.43 . AB=0.0;AO=91;DP=91;QA=3431;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:91:0:0:91:3431:-308.953,-27.3937,0.0 MTB_anc 4359165 . C G 1621 . AB=0.0;AO=50;DP=51;QA=1866;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:51:1:38:50:1866:-164.405,-11.5553,0.0 MTB_anc 4361879 . T C 2394.9 . AB=0.0;AO=73;DP=73;QA=2722;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2722:-245.192,-21.9752,0.0 MTB_anc 4366195 . C T 2512.66 . AB=0.0;AO=77;DP=79;QA=2887;QR=71;RO=2;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:79:2:71:77:2887:-253.287,-17.0398,0.0 MTB_anc 4367649 . G A 2324.26 . AB=0.0;AO=70;DP=70;QA=2628;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2628:-236.735,-21.0721,0.0 MTB_anc 4370245 . CA C 2416.3 . AB=0.0;AO=74;DP=74;QA=2740;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2740:-246.753,-22.2762,0.0 MTB_anc 4372353 . C G 1901.94 . AB=0.0;AO=58;DP=58;QA=2165;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:2165:-195.093,-17.4597,0.0 MTB_anc 4372634 . G T 2437.17 . AB=0.0;AO=73;DP=73;QA=2743;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2743:-247.078,-21.9752,0.0 MTB_anc 4374228 . C T 2409.51 . AB=0.0;AO=73;DP=73;QA=2723;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2723:-245.283,-21.9752,0.0 MTB_anc 4377033 . C G 2347.58 . AB=0.0;AO=70;DP=70;QA=2643;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2643:-238.081,-21.0721,0.0 MTB_anc 4383099 . G A 1913.34 . AB=0.0;AO=58;DP=58;QA=2163;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:58:0:0:58:2163:-194.914,-17.4597,0.0 MTB_anc 4383144 . C CCGGGG 1300.79 . AB=0.0;AO=41;DP=43;QA=1477;QR=0;RO=0;TYPE=ins GT:DP:RO:QR:AO:QA:GL 1/1:43:0:0:41:1477:-132.858,-12.3422,0.0 MTB_anc 4383655 . G A 2429.7 . AB=0.0;AO=73;DP=73;QA=2741;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2741:-246.899,-21.9752,0.0 MTB_anc 4384007 . G C 2491.77 . AB=0.0;AO=74;DP=74;QA=2801;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:74:0:0:74:2801:-252.291,-22.2762,0.0 MTB_anc 4385187 . G A 1926.65 . AB=0.0;AO=59;DP=59;QA=2182;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:59:0:0:59:2182:-196.623,-17.7608,0.0 MTB_anc 4385709 . C G 2486.86 . AB=0.0;AO=76;DP=77;QA=2831;QR=38;RO=1;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:77:1:38:76:2831:-251.196,-19.382,0.0 MTB_anc 4386142 . G A 2330.82 . AB=0.0;AO=70;DP=70;QA=2632;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:70:0:0:70:2632:-237.094,-21.0721,0.0 MTB_anc 4386228 . C T 2965.46 . AB=0.0;AO=90;DP=90;QA=3359;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:90:0:0:90:3359:-302.478,-27.0927,0.0 MTB_anc 4393178 . G A 2199.81 . AB=0.0;AO=66;DP=66;QA=2477;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:66:0:0:66:2477:-223.153,-19.868,0.0 MTB_anc 4394210 . C G 2513.07 . AB=0.0;AO=75;DP=75;QA=2826;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:75:0:0:75:2826:-254.541,-22.5773,0.0 MTB_anc 4395387 . G A 2427.35 . AB=0.0;AO=73;DP=73;QA=2730;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:73:0:0:73:2730:-245.908,-21.9752,0.0 MTB_anc 4400660 . AC A 1745.19 . AB=0.0;AO=53;DP=53;QA=1980;QR=0;RO=0;TYPE=del GT:DP:RO:QR:AO:QA:GL 1/1:53:0:0:53:1980:-178.455,-15.9546,0.0 MTB_anc 4407588 . C T 1871.69 . AB=0.0;AO=57;DP=57;QA=2118;QR=0;RO=0;TYPE=snp GT:DP:RO:QR:AO:QA:GL 1/1:57:0:0:57:2118:-190.868,-17.1587,0.0 MTB_anc 4408920 . GGGT AGGC 2273.01 . AB=0.0;AO=69;DP=69;QA=2587;QR=0;RO=0;TYPE=complex GT:DP:RO:QR:AO:QA:GL 1/1:69:0:0:69:2587:-232.81,-20.7711,0.0