Software Open Access

From telomere to telomere: the transcriptional and epigenetic state of human repeat elements analysis code: T2T-CHM13

Hoyt, Savannah J.; Storer, Jessica M.; Hartley, Gabrielle A.; Grady, Patrick G.S.; Gershman, Ariel; Limouse, Charles; Halabian, Reza; Wojenski, Luke; O'Neill, Rachel J.

This repository contains pipelines and data regarding the bioinformatic analyses for the paper entitled From telomere to telomere: the transcriptional and epigenetic state of human repeat elements by Hoyt et al.  

Files (507.0 MB)
Name Size
Figure-AlignmentandNexusFiles.zip
md5:dab17e5eba195a1c3fb11b1a8ee74b28
155.8 kB Download
final_consensi_gap_nohsat_teucer.embl.txt
md5:ff26173ee76d8c3f41b1d2dcad7136d4
101.0 kB Download
GRCh38-rmskV2.bigBed
md5:6c16bfed4a7e359e9c960636a9d5d3ee
168.4 MB Download
HG002-X-v1.0.rmskV2.bigBed
md5:3f94e75f0c83091c6c62127a7a2e31bf
169.3 MB Download
README.md
md5:f35634072a189a49acb79ece5a6b9d3d
1.6 kB Download
t2t-chm13-v1.1.composite-repeats-singletons-arrays.bed.gz
md5:0d0464cf1cb02b31aa4c2a60157000b5
2.4 kB Download
t2t-chm13-v1.1.rmsk.bigBed
md5:8f725f960d70e2012928418901d2248e
168.8 MB Download
t2t-chm13-v1.1.satellites-monomers-arrays.bed.gz
md5:f714e64508d3456074eb4cad37d70b70
2.0 kB Download
t2t_transposable-elements-main.zip
md5:424c6737b13a72e212849c966bd86428
189.1 kB Download
390
306
views
downloads
All versions This version
Views 390196
Downloads 306234
Data volume 27.4 GB23.1 GB
Unique views 325171
Unique downloads 153106

Share

Cite as