Software Open Access
Nicolas Rodriguez; Andreas Dräger; Mike Hucka; David Emanuel Vetter; Roman Schulte; Bhavye Jain; Christoph Blessing; Leandro Watanabe; tmHamm; Onur101010; Jakob Admard; MeikeAi; Ibrahim Vazirabad; Alexander Dörr; Piero Dalle Pezze; Clemens82; Lisa Falk; marine3; Wrzodek; Alex Thomas; thortiede; RolandKeller5; Florian Mittag; Jan Rudolph; Victor Kofia; Tramy Nguyen; Eugen Netz; LeaBuchweitz; Thomas Zajac
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It comprises the two previously published snapshot releases, version 1.6 and version 1.6.1\u0251.</p>\n<p>To access this version of JSBML via Maven, please use:</p>\n<pre><code> <dependency>\n <groupId>org.sbml.jsbml</groupId>\n <artifactId>jsbml</artifactId>\n <version>1.6.1</version>\n </dependency>\n</code></pre>\nNew Features\n<ul>\n<li>biojava-ontology was bumped to version 6.0.4.</li>\n<li>Convenient features, such as quick check for the presence of any specific <code>SBase</code> extension</li>\n<li>Improvements to the documentation (JavaDoc, users' guide, and the project's <code>README</code> file)</li>\n<li>Broader coverage of the offline validation capability</li>\n<li>Improved support for constraint-based modeling in the <code>ModelBuilder</code>: automatic creation of common unit definition objects.</li>\n</ul>\nBug Fixes\n<ul>\n<li>Update the dependency to log4j to version 2.17.0 after the announcement of a major security issue in the previous version.</li>\n<li>JSBML core does no longer have dependencies to any of the packages</li>\n<li>Preventing <code>ASTNode.astNodeToTree</code> from recursive calls</li>\n<li>Correction of wrong comparisons with <code>==</code> where <code>.equals()</code> needs to be called for <code>String</code> comparison</li>\n<li>Fixed Incorrect usage of model annotation</li>\n<li>Fixed return type of <code>createRenderCubicBezier</code> method to <code>RenderCubicBezier</code> Thanks to @eikept for this fix!</li>\n<li>Fixed incorrect unit derivation. Thanks to @eikept for this analysis!</li>\n</ul>\n<p>When using JSBML, please cite:\n\u261e Rodriguez N., Thomas A., Watanabe L., Vazirabad I.Y., Kofia V. <em>et al</em>. JSBML 1.0: providing a smorgasbord of options to encode systems biology models. Bioinformatics (2015), 31(20):3383\u20133386. <a href=\"https://doi.org/10.1093%2Fbioinformatics%2Fbtv341\">https://doi.org/10.1093%2Fbioinformatics%2Fbtv341</a></p>", "license": { "id": "other-open" }, "title": "sbmlteam/jsbml: JSBML 1.6.1", "relations": { "version": [ { "count": 11, "index": 8, "parent": { "pid_type": "recid", "pid_value": "595308" }, "is_last": false, "last_child": { "pid_type": "recid", "pid_value": "5833874" } } ] }, "version": "jsbml-1.6.1", "publication_date": "2022-01-10", "creators": [ { "affiliation": "Babraham Institute, Cambridge, UK", "name": "Nicolas Rodriguez" }, { "affiliation": "Institute for Bioinformatics and Medical Informatics (IBMI)", "name": "Andreas Dr\u00e4ger" }, { "affiliation": "California Institute of Technology", "name": "Mike Hucka" }, { "name": "David Emanuel Vetter" }, { "name": "Roman Schulte" }, { "affiliation": "@sdsmdg", "name": "Bhavye Jain" }, { "name": "Christoph Blessing" }, { "name": "Leandro Watanabe" }, { "name": "tmHamm" }, { "name": "Onur101010" }, { "name": "Jakob Admard" }, { "name": "MeikeAi" }, { "name": "Ibrahim Vazirabad" }, { "name": "Alexander D\u00f6rr" }, { "affiliation": "@Congenica", "name": "Piero Dalle Pezze" }, { "name": "Clemens82" }, { "name": "Lisa Falk" }, { "name": "marine3" }, { "name": "Wrzodek" }, { "affiliation": "C.H. 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All versions | This version | |
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Views | 910 | 39 |
Downloads | 111 | 5 |
Data volume | 7.9 GB | 393.9 MB |
Unique views | 754 | 35 |
Unique downloads | 90 | 5 |