Software Open Access
sbmlteam/jsbml: JSBML 1.6.1
Nicolas Rodriguez; Andreas Dräger; Mike Hucka; David Emanuel Vetter; Roman Schulte; Bhavye Jain; Christoph Blessing; Leandro Watanabe; tmHamm; Onur101010; Jakob Admard; MeikeAi; Ibrahim Vazirabad; Alexander Dörr; Piero Dalle Pezze; Clemens82; Lisa Falk; marine3; Wrzodek; Alex Thomas; thortiede; RolandKeller5; Florian Mittag; Jan Rudolph; Victor Kofia; Tramy Nguyen; Eugen Netz; LeaBuchweitz; Thomas Zajac
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<dct:description><p>This is a stable release of JSBML version 1.6.1. It comprises the two previously published snapshot releases, version 1.6 and version 1.6.1ɑ.</p> <p>To access this version of JSBML via Maven, please use:</p> <pre><code> &lt;dependency&gt; &lt;groupId&gt;org.sbml.jsbml&lt;/groupId&gt; &lt;artifactId&gt;jsbml&lt;/artifactId&gt; &lt;version&gt;1.6.1&lt;/version&gt; &lt;/dependency&gt; </code></pre> New Features <ul> <li>biojava-ontology was bumped to version 6.0.4.</li> <li>Convenient features, such as quick check for the presence of any specific <code>SBase</code> extension</li> <li>Improvements to the documentation (JavaDoc, users' guide, and the project's <code>README</code> file)</li> <li>Broader coverage of the offline validation capability</li> <li>Improved support for constraint-based modeling in the <code>ModelBuilder</code>: automatic creation of common unit definition objects.</li> </ul> Bug Fixes <ul> <li>Update the dependency to log4j to version 2.17.0 after the announcement of a major security issue in the previous version.</li> <li>JSBML core does no longer have dependencies to any of the packages</li> <li>Preventing <code>ASTNode.astNodeToTree</code> from recursive calls</li> <li>Correction of wrong comparisons with <code>==</code> where <code>.equals()</code> needs to be called for <code>String</code> comparison</li> <li>Fixed Incorrect usage of model annotation</li> <li>Fixed return type of <code>createRenderCubicBezier</code> method to <code>RenderCubicBezier</code> Thanks to @eikept for this fix!</li> <li>Fixed incorrect unit derivation. Thanks to @eikept for this analysis!</li> </ul> <p>When using JSBML, please cite: ☞ Rodriguez N., Thomas A., Watanabe L., Vazirabad I.Y., Kofia V. <em>et al</em>. JSBML 1.0: providing a smorgasbord of options to encode systems biology models. Bioinformatics (2015), 31(20):3383–3386. <a href="https://doi.org/10.1093%2Fbioinformatics%2Fbtv341">https://doi.org/10.1093%2Fbioinformatics%2Fbtv341</a></p></dct:description>
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910
111
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 910 | 39 |
| Downloads | 111 | 5 |
| Data volume | 7.9 GB | 393.9 MB |
| Unique views | 754 | 35 |
| Unique downloads | 90 | 5 |
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