Dataset Open Access

Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism

Ryu, Jae Yong; Kim, Hyun Uk; Lee, Sang Yup


Dublin Core Export

<?xml version='1.0' encoding='utf-8'?>
<oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:creator>Ryu, Jae Yong</dc:creator>
  <dc:creator>Kim, Hyun Uk</dc:creator>
  <dc:creator>Lee, Sang Yup</dc:creator>
  <dc:date>2017-05-28</dc:date>
  <dc:description>
	Eight versions of COBRA-compliant SBML files are available for each Recon 2M.1 and Recon 2M.2 depending on the use of: MNXref versus BiGG IDs; Entrez gene IDs (GPR associations) versus Ensembl transcript IDs versus RefSeq transcript IDs versus UCSC transcript IDs (TPR associations for the last three database IDs).
	892 personal GEMs (only T-GEMs) built with Recon 2.2
	1,784 personal GEMs (both P-GEMs and T-GEMs) built with Recon 2M.1
	892 personal GEMs (only T-GEMs) built with Recon 2M.2


 

Publication

Jae Yong Ryu1, Hyun Uk Kim1 &amp; Sang Yup Lee*. Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism., Proc. Natl. Acad. Sci. U.S.A., 2017, http://www.pnas.org/content/early/2017/10/23/1713050114

 </dc:description>
  <dc:description>This work was supported by the Technology Development Program to Solve Climate Changes on Systems Metabolic Engineering for Biorefineries (NRF-2012M1A2A2026556 and NRF-2012M1A2A2026557) from the Ministry of Science, ICT and Future Planning (MSIP) through the National Research Foundation (NRF) of Korea.</dc:description>
  <dc:identifier>https://zenodo.org/record/583326</dc:identifier>
  <dc:identifier>10.5281/zenodo.583326</dc:identifier>
  <dc:identifier>oai:zenodo.org:583326</dc:identifier>
  <dc:relation>doi:10.5281/zenodo.599876</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>http://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:subject>Human genome-scale metabolic model</dc:subject>
  <dc:subject>Recon</dc:subject>
  <dc:subject>Gene-transcript-protein-reaction associations (GeTPRA)</dc:subject>
  <dc:subject>Protein isoform</dc:subject>
  <dc:title>Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>dataset</dc:type>
</oai_dc:dc>
1,226
227
views
downloads
All versions This version
Views 1,2261,226
Downloads 227227
Data volume 7.9 GB7.9 GB
Unique views 1,1871,187
Unique downloads 148148

Share

Cite as