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Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism

Ryu, Jae Yong; Kim, Hyun Uk; Lee, Sang Yup


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.583326", 
  "title": "Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism", 
  "issued": {
    "date-parts": [
      [
        2017, 
        5, 
        28
      ]
    ]
  }, 
  "abstract": "<ul>\n\t<li>Eight versions of COBRA-compliant SBML files are available for each Recon 2M.1 and Recon 2M.2 depending on the use of: MNXref versus BiGG IDs; Entrez gene IDs (GPR associations) versus Ensembl transcript IDs versus RefSeq transcript IDs versus UCSC transcript IDs (TPR associations for the last three database IDs).</li>\n\t<li>892 personal GEMs (only T-GEMs) built with Recon 2.2</li>\n\t<li>1,784 personal GEMs (both P-GEMs and T-GEMs) built with Recon 2M.1</li>\n\t<li>892 personal GEMs (only T-GEMs) built with Recon 2M.2</li>\n</ul>\n\n<p>\u00a0</p>\n\n<p><strong>Publication</strong></p>\n\n<p>Jae Yong Ryu<sup>1</sup>, Hyun Uk Kim<sup>1</sup> &amp; Sang Yup Lee<sup>*</sup>. Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism., <em>Proc. Natl. Acad. Sci. U.S.A.</em>, 2017, http://www.pnas.org/content/early/2017/10/23/1713050114</p>\n\n<p>\u00a0</p>", 
  "author": [
    {
      "family": "Ryu, Jae Yong"
    }, 
    {
      "family": "Kim, Hyun Uk"
    }, 
    {
      "family": "Lee, Sang Yup"
    }
  ], 
  "note": "This work was supported by the Technology Development Program to Solve Climate Changes on Systems Metabolic Engineering for Biorefineries (NRF-2012M1A2A2026556 and NRF-2012M1A2A2026557) from the Ministry of Science, ICT and Future Planning (MSIP) through the National Research Foundation (NRF) of Korea.", 
  "type": "dataset", 
  "id": "583326"
}
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