Dataset Open Access

Modeling exosome complexes from cross-link MS data

Shi, Yi; Pellarin, Riccardo; Fridy, Peter C; Fernandez-Martinez, Javier; Thompson, Mary K; Li, Yinyin; Wang, Qing Jun; Sali, Andrej; Rout, Michael P; Chait, Brian T

Data manager(s)
Webb, Benjamin

This repository contains the modeling scripts, the ensemble of models, and the results of the analysis for the modeling of the S.cerevisiae exosome complex (named exo10, comprising of Rrp40, Rrp4, Csl4, Rrp45, Rrp46, Rrp42, Rrp43, Mtr3, Ski6 and Rrp44), in presence of Ski7 (exo10+Ski7 below) or Rrp6 (exo10+Rrp6 below) proteins. The modeling is performed based on cross-link Mass-Spectrometry data, crystallographic structures, and comparative models.

For more information about how to reproduce this modeling, see https://salilab.org/exosome or the README file.

Files (1.4 GB)
Name Size
exosome-v1.0.1.zip
md5:e0a6223ecd5af9698a9674e264861859
2.5 MB Download
Rrp6-cluster0.dcd
md5:0e099edc6eaf67a7fb040b69d8efc72b
3.5 MB Download
Rrp6-cluster0.zip
md5:5f384ae43574703c2a46d08dcf50e752
22.1 MB Download
Rrp6-cluster1.dcd
md5:15d8c9b99ef6e17f90d7b689d312f3a3
6.6 MB Download
Rrp6-cluster1.zip
md5:a8d16c79ed5bad46b3a005e28401f633
40.8 MB Download
Rrp6.1-output.zip
md5:eba833d3aa13b660da5bb71e4e11abd6
261.0 MB Download
Rrp6.2-output.zip
md5:443209d50df2283f7e3c8c071d937d0d
324.3 MB Download
Ski7-cluster0.zip
md5:402edab48fdd07fc564a8e2d726f2f65
46.3 MB Download
Ski7-cluster1.zip
md5:da0c5fef7a3b32350fb9bf253cfe4c0a
12.0 MB Download
Ski7.1-output.zip
md5:58f81c15dea019b64519d6f4c747a860
260.4 MB Download
Ski7.2-output.zip
md5:dfdb1be6cac9139f6816321297ba90aa
386.0 MB Download
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