10.5281/zenodo.581704
https://zenodo.org/records/581704
oai:zenodo.org:581704
Gorgolewski, Krzysztof J.
Krzysztof J.
Gorgolewski
0000-0003-3321-7583
Department of Psychology, Stanford University
Esteban, Oscar
Oscar
Esteban
0000-0001-8435-6191
Department of Psychology, Stanford University
Ellis, David Gage
David Gage
Ellis
0000-0002-3718-6836
The University of Iowa
Notter, Michael Philipp
Michael Philipp
Notter
0000-0002-5866-047X
The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland
Ziegler, Erik
Erik
Ziegler
0000-0003-1857-8129
Independent
Johnson, Hans
Hans
Johnson
0000-0001-9513-2660
University of Iowa
Hamalainen, Carlo
Carlo
Hamalainen
0000-0001-7655-3830
Yvernault, Benjamin
Benjamin
Yvernault
Burns, Christopher
Christopher
Burns
Manhães-Savio, Alexandre
Alexandre
Manhães-Savio
0000-0002-6608-6885
Klinikum rechts der Isar, TUM. ACPySS
Jarecka, Dorota
Dorota
Jarecka
0000-0003-1857-8129
MIT
Markiewicz, Christopher J.
Christopher J.
Markiewicz
0000-0002-6533-164X
Stanford University
Salo, Taylor
Taylor
Salo
0000-0001-9813-3167
Florida International University
Clark, Daniel
Daniel
Clark
0000-0002-8121-8954
Developer
Waskom, Michael
Michael
Waskom
Department of Psychology, Stanford University
Wong, Jason
Jason
Wong
Shattuck Lab, UCLA Brain Mapping Center
Modat, Marc
Marc
Modat
Dewey, Blake E
Blake E
Dewey
0000-0003-4554-5058
Department of Electrical and Computer Engineering, Johns Hopkins University
Clark, Michael G.
Michael G.
Clark
National Institutes of Health
Dayan, Michael
Michael
Dayan
0000-0002-2666-0969
Mayo Clinic, Neurology, Rochester, MN, USA
Loney, Fred
Fred
Loney
Madison, Cindee
Cindee
Madison
Gramfort, Alexandre
Alexandre
Gramfort
0000-0001-9791-4404
CNRS LTCI, Telecom ParisTech, Université Paris-Saclay
Keshavan, Anisha
Anisha
Keshavan
0000-0003-3554-043X
UC Berkeley - UCSF Graduate Program in Bioengineering
Berleant, Shoshana
Shoshana
Berleant
Pinsard, Basile
Basile
Pinsard
Goncalves, Mathias
Mathias
Goncalves
MIT
Clark, Dav
Dav
Clark
0000-0002-3982-4416
UC Berkeley
Cipollini, Ben
Ben
Cipollini
0000-0002-7782-0790
UC San Diego
Varoquaux, Gael
Gael
Varoquaux
0000-0003-1076-5122
INRIA
Wassermann , Demian
Demian
Wassermann
0000-0001-5194-6056
Athena EPI, Inria Sophia-Antipolis
Rokem, Ariel
Ariel
Rokem
0000-0003-0679-1985
The University of Washington eScience Institute
Halchenko, Yaroslav O.
Yaroslav O.
Halchenko
0000-0003-3456-2493
Dartmouth College: Hanover, NH, United States
Forbes, Jessica
Jessica
Forbes
Moloney, Brendan
Brendan
Moloney
Malone, Ian B.
Ian B.
Malone
0000-0001-7512-7856
University College London
Hanke, Michael
Michael
Hanke
0000-0001-6398-6370
Otto-von-Guericke-University Magdeburg, Germany
Mordom, David
David
Mordom
Buchanan, Colin
Colin
Buchanan
Pauli, Wolfgang M.
Wolfgang M.
Pauli
0000-0002-0966-0254
California Institute of Technology
Huntenburg, Julia M.
Julia M.
Huntenburg
0000-0003-0579-9811
Research Group Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
Horea, Christian
Christian
Horea
0000-0001-7037-2449
Institute for Biomedical Engineering, ETH and University of Zurich
Schwartz, Yannick
Yannick
Schwartz
Tungaraza, Rosalia
Rosalia
Tungaraza
Iqbal, Shariq
Shariq
Iqbal
0000-0003-2766-8425
Duke University
Kleesiek, Jens
Jens
Kleesiek
UniversityHospital Heidelberg, Germany
Sikka, Sharad
Sharad
Sikka
Nathan s Kline institute for psychiatric research
Frohlich, Caroline
Caroline
Frohlich
Child Mind Institute
Kent, James
James
Kent
Perez-Guevara, Martin
Martin
Perez-Guevara
Watanabe, Aimi
Aimi
Watanabe
Welch, David
David
Welch
University of Iowa
Cumba, Chad
Chad
Cumba
Ginsburg, Daniel
Daniel
Ginsburg
Eshaghi, Arman
Arman
Eshaghi
0000-0002-6652-3512
University College London
Kastman, Erik
Erik
Kastman
0000-0001-7221-9042
Harvard University - Psychology
Bougacha, Salma
Salma
Bougacha
Molecular Imaging Research Center, CEA, France
Blair, Ross
Ross
Blair
Acland, Benjamin
Benjamin
Acland
0000-0001-6392-6634
Washington University in St Louis
Gillman, Ashley
Ashley
Gillman
0000-0001-9130-1092
Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland
Schaefer, Alexander
Alexander
Schaefer
0000-0001-6488-4739
National University Singapore
Nichols, B. Nolan
B. Nolan
Nichols
0000-0003-1099-3328
SRI International
Giavasis, Steven
Steven
Giavasis
Child Mind Institute
Erickson, Drew
Drew
Erickson
Correa, Carlos
Carlos
Correa
Ghayoor, Ali
Ali
Ghayoor
Küttner, René
René
Küttner
Haselgrove, Christian
Christian
Haselgrove
Zhou, Dale
Dale
Zhou
Craddock, R. Cameron
R. Cameron
Craddock
0000-0002-4950-1303
Child Mind Institute
Haehn, Daniel
Daniel
Haehn
Lampe, Leonie
Leonie
Lampe
MPI CBS Leipzig, Germany
Millman, Jarrod
Jarrod
Millman
Lai, Jeff
Jeff
Lai
Renfro, Mandy
Mandy
Renfro
Liu, Siqi
Siqi
Liu
The University of Sydney
Stadler, Jörg
Jörg
Stadler
0000-0003-4313-129X
Leibniz Institute for Neurobiology
Glatard, Tristan
Tristan
Glatard
0000-0003-2620-5883
1 McGill Centre for Integrative Neuroscience (MCIN), Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute (MNI), McGill University, Montréal, 3801 University Street, WB-208, H3A 2B4, Québec, Canada. 2 University of Lyon, CNRS, INSERM, CREATIS., Villeurbanne, 7, avenue Jean Capelle, 69621, France.
Kahn, Ari E.
Ari E.
Kahn
0000-0002-2127-0507
University of Pennsylvania
Kong, Xiang-Zhen
Xiang-Zhen
Kong
0000-0002-0805-1350
State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
Triplett, William
William
Triplett
0000-0002-9546-1306
Department of Psychology, Stanford University
Park, Anne
Anne
Park
McDermottroe, Conor
Conor
McDermottroe
Hallquist, Michael
Michael
Hallquist
Poldrack, Russell
Russell
Poldrack
Perkins, L. Nathan
L. Nathan
Perkins
Boston University
Noel, Maxime
Maxime
Noel
Gerhard, Stephan
Stephan
Gerhard
0000-0003-4454-6171
Institute of Neuroinformatics, ETH/University of Zurich
Salvatore, John
John
Salvatore
Mertz, Fred
Fred
Mertz
Broderick, William
William
Broderick
0000-0002-8999-9003
Duke University
Inati, Souheil
Souheil
Inati
Hinds, Oliver
Oliver
Hinds
Brett, Matthew
Matthew
Brett
Durnez, Joke
Joke
Durnez
0000-0001-9030-2202
Department of Psychology, Stanford University; Parietal, INRIA
Tambini, Arielle
Arielle
Tambini
Rothmei, Simon
Simon
Rothmei
Andberg, Sami Kristian
Sami Kristian
Andberg
0000-0002-5650-3964
University of Helsinki
Cooper, Gavin
Gavin
Cooper
0000-0002-7186-5293
University of Newcastle, Australia
Marina, Ana
Ana
Marina
Mattfeld, Aaron
Aaron
Mattfeld
Urchs, Sebastian
Sebastian
Urchs
Sharp, Paul
Paul
Sharp
University of illinois urbana champaign
Matsubara, K
K
Matsubara
Geisler, Daniel
Daniel
Geisler
0000-0003-2076-5329
Technische Universität Dresden, Faculty of Medicine, Department of Child and Adolescent Psychiatry
Cheung, Brian
Brian
Cheung
Floren, Andrew
Andrew
Floren
0000-0003-3618-2056
The University of Texas at Austin
Nickson, Thomas
Thomas
Nickson
Pannetier, Nicolas
Nicolas
Pannetier
0000-0002-0744-5155
Medical Imaging & Biomarkers, Bioclinica, Newark, CA, USA.
Weinstein, Alejandro
Alejandro
Weinstein
Dubois, Mathieu
Mathieu
Dubois
Arias, Jaime
Jaime
Arias
Tarbert, Claire
Claire
Tarbert
Schlamp, Kai
Kai
Schlamp
Jordan, Kesshi
Kesshi
Jordan
0000-0001-6313-0580
University of California, San Francisco
Liem, Franz
Franz
Liem
Saase, Victor
Victor
Saase
Harms, Robbert
Robbert
Harms
Khanuja, Ranjeet
Ranjeet
Khanuja
Podranski, Kornelius
Kornelius
Podranski
Flandin, Guillaume
Guillaume
Flandin
Papadopoulos Orfanos, Dimitri
Dimitri
Papadopoulos Orfanos
0000-0002-1242-8990
CEA
Schwabacher, Isaac
Isaac
Schwabacher
McNamee, Daniel
Daniel
McNamee
0000-0001-9928-4960
University of Cambridge
Falkiewicz, Marcel
Marcel
Falkiewicz
Pellman, John
John
Pellman
0000-0001-6810-4461
Child Mind Institute / Nathan Kline Institute
Linkersdörfer, Janosch
Janosch
Linkersdörfer
0000-0002-1577-1233
German Institute for International Educational Research
Varada, Jan
Jan
Varada
Pérez-García, Fernando
Fernando
Pérez-García
0000-0001-9090-3024
Stereotaxy Core, Brain & Spine Institute
Davison, Andrew
Andrew
Davison
Shachnev, Dmitry
Dmitry
Shachnev
Ghosh, Satrajit
Satrajit
Ghosh
0000-0002-5312-6729
MIT, HMS
Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.1
Zenodo
2017
neuroimaging
workflow
pipeline
2017-05-21
https://github.com/nipy/nipype/tree/0.13.1
10.5281/zenodo.596855
0.13.1
Apache License 2.0
0.13.1 (May 20, 2017)
FIX: Make release compatible with conda-forge build process (https://github.com/nipy/nipype/pull/2017)
ENH: Update some minimum versions in compliance with Debian Jessie (https://github.com/nipy/nipype/pull/2017)
ENH: Circle builds use cached docker layers (https://github.com/nipy/nipype/pull/2017)
ENH: Base docker to use FS6 and ANTS 2.2.0 (https://github.com/nipy/nipype/pull/2024)
FIX: Mailmap and contributor acknowledgment (https://github.com/nipy/nipype/pull/2017)
FIX: Preserve node properties in sub nodes of MapNode (https://github.com/nipy/nipype/pull/2019)
FIX: Fix interfaces 3DUnifize, ICA_AROMA, BinaryMaths, RegAverage, BBRegister, AffineInitializer (https://github.com/nipy/nipype/pull/2025, https://github.com/nipy/nipype/pull/2027, https://github.com/nipy/nipype/pull/2036, https://github.com/nipy/nipype/pull/2037, https://github.com/nipy/nipype/pull/2031, https://github.com/nipy/nipype/pull/2010)
ENH: Add Anisotropic Power interface (https://github.com/nipy/nipype/pull/2039)
FIX: Bayesian estimation in SPM (https://github.com/nipy/nipype/pull/2030)
0.13.0 (May 11, 2017)
ENH: Multi-stage recon-all directives (https://github.com/nipy/nipype/pull/1991)
FIX: FEAT "folder does not exist" error (https://github.com/nipy/nipype/pull/2000)
ENH: Niftyfit interfaces (https://github.com/nipy/nipype/pull/1910)
FIX: Define ANTSPATH for BrainExtraction automatically (https://github.com/nipy/nipype/pull/1986)
ENH: New trait for imaging files (https://github.com/nipy/nipype/pull/1949)
ENH: Niftyseg interfaces (https://github.com/nipy/nipype/pull/1911)
ENH: Niftyreg interfaces (https://github.com/nipy/nipype/pull/1913)
MRG: Allow more support for CLI (https://github.com/nipy/nipype/pull/1908)
ENH: 3dQwarpPlusMinus interface (https://github.com/nipy/nipype/pull/1974)
FIX: PY3.6 support (https://github.com/nipy/nipype/pull/1977)
FIX: PY3 and stream fixes for MRTrix2TrackVis (https://github.com/nipy/nipype/pull/1804)
ENH: More mask options for CompCor interfaces (https://github.com/nipy/nipype/pull/1968 + https://github.com/nipy/nipype/pull/1992)
ENH: Additional TOPUP outputs (https://github.com/nipy/nipype/pull/1976)
ENH: Additional Eddy flags (https://github.com/nipy/nipype/pull/1967)
ENH: ReconAll handlers for less common cases (https://github.com/nipy/nipype/pull/1966)
ENH: FreeSurferSource now finds graymid/midthickness surfs (https://github.com/nipy/nipype/pull/1972)
ENH: Additional fslmaths dimensional reduction operations (https://github.com/nipy/nipype/pull/1956)
ENH: More options for RobustFOV interface (https://github.com/nipy/nipype/pull/1923)
ENH: Add MRIsCombine to FreeSurfer utils (https://github.com/nipy/nipype/pull/1948)
FIX: Level1Design EV parameter substitution (https://github.com/nipy/nipype/pull/1953)
FIX: Dcm2niix outputs can be uncompressed (https://github.com/nipy/nipype/pull/1951)
FIX: Ensure build fails in Circle when tests fail (https://github.com/nipy/nipype/pull/1981)
ENH: Add interface to antsAffineInitializer (https://github.com/nipy/nipype/pull/1980)
ENH: AFNI motion parameter support for FrameWiseDisplacement (https://github.com/nipy/nipype/pull/1840)
ENH: Add ANTs KellyKapowski interface (https://github.com/nipy/nipype/pull/1845)
FIX: AFNI interface bug setting OMP_NUM_THREADS to 1 (https://github.com/nipy/nipype/pull/1728)
FIX: Select Eddy run command at runtime (https://github.com/nipy/nipype/pull/1871)
FIX: Increase FLIRT's flexibility with apply_xfm (https://github.com/nipy/nipype/pull/1875)
DOC: Update FSL preprocess docstrings (https://github.com/nipy/nipype/pull/1881)
ENH: Support GIFTI outputs in SampleToSurface (https://github.com/nipy/nipype/pull/1886)
FIX: Configparser differences between PY2 and PY3 (https://github.com/nipy/nipype/pull/1890)
ENH: Add mris_expand interface (https://github.com/nipy/nipype/pull/1893)
FIX: Split over-eager globs in FreeSurferSource (https://github.com/nipy/nipype/pull/1894)
FIX: Store undefined by default so that xor checks don't trip (https://github.com/nipy/nipype/pull/1903)
FIX: Gantt chart generator PY3 compatibility (https://github.com/nipy/nipype/pull/1907)
FIX: Add DOF and --fsl-dof options to BBRegister (https://github.com/nipy/nipype/pull/1917)
ENH: Auto-derive input_names in Function (https://github.com/nipy/nipype/pull/1918)
FIX: Minor fixes for NonSteadyStateDetector (https://github.com/nipy/nipype/pull/1926)
DOC: Add duecredit references for AFNI and FSL (https://github.com/nipy/nipype/pull/1930)
ENH: Added zenodo (https://zenodo.org/) file (https://github.com/nipy/nipype/pull/1924)
ENH: Disable symlinks on CIFS filesystems (https://github.com/nipy/nipype/pull/1941)
ENH: Sphinx extension to plot workflows (https://github.com/nipy/nipype/pull/1896)
ENH: Added non-steady state detector for EPI data (https://github.com/nipy/nipype/pull/1839)
ENH: Enable new BBRegister init options for FSv6+ (https://github.com/nipy/nipype/pull/1811)
REF: Splits nipype.interfaces.utility into base, csv, and wrappers (https://github.com/nipy/nipype/pull/1828)
FIX: Makespec now runs with nipype in current directory (https://github.com/nipy/nipype/pull/1813)
FIX: Flexible nifti opening with mmap if Numpy < 1.12.0 (https://github.com/nipy/nipype/pull/1796 + https://github.com/nipy/nipype/pull/1831)
ENH: DVARS includes intensity normalization feature - turned on by default (https://github.com/nipy/nipype/pull/1827)
FIX: DVARS is correctly using sum of squares instead of standard deviation (https://github.com/nipy/nipype/pull/1827)
ENH: Refactoring of nipype.interfaces.utility (https://github.com/nipy/nipype/pull/1828)
FIX: CircleCI were failing silently. Some fixes to tests (https://github.com/nipy/nipype/pull/1833)
FIX: Issues in Docker image permissions, and docker documentation (https://github.com/nipy/nipype/pull/1825)
ENH: Revised all Dockerfiles and automated deployment to Docker Hub from CircleCI (https://github.com/nipy/nipype/pull/1815)
ENH: Update ReconAll interface for FreeSurfer v6.0.0 (https://github.com/nipy/nipype/pull/1790)
FIX: Cast DVARS float outputs to avoid memmap error (https://github.com/nipy/nipype/pull/1777)
FIX: FSL FNIRT intensity mapping files (https://github.com/nipy/nipype/pull/1799)
ENH: Additional outputs generated by FSL EDDY (https://github.com/nipy/nipype/pull/1793)
TST: Parallelize CircleCI build across 4 containers (https://github.com/nipy/nipype/pull/1769)
0.13.0-rc1 (January 4, 2017)
FIX: Compatibility with traits 4.6 (https://github.com/nipy/nipype/pull/1770)
FIX: Multiproc deadlock (https://github.com/nipy/nipype/pull/1756)
TST: Replace nose and unittest with pytest (https://github.com/nipy/nipype/pull/1722, https://github.com/nipy/nipype/pull/1751)
FIX: Semaphore capture using MultiProc plugin (https://github.com/nipy/nipype/pull/1689)
REF: Refactor AFNI interfaces (https://github.com/nipy/nipype/pull/1678, https://github.com/nipy/nipype/pull/1680)
ENH: Move nipype commands to group command using click (https://github.com/nipy/nipype/pull/1608)
FIX: AFNI Retroicor interface fixes (https://github.com/nipy/nipype/pull/1669)
FIX: Minor errors after migration to setuptools (https://github.com/nipy/nipype/pull/1671)
ENH: Add AFNI 3dNote interface (https://github.com/nipy/nipype/pull/1637)
ENH: Abandon distutils, only use setuptools (https://github.com/nipy/nipype/pull/1627)
FIX: Minor bugfixes related to unicode literals (https://github.com/nipy/nipype/pull/1656)
TST: Automatic retries in travis (https://github.com/nipy/nipype/pull/1659/files)
ENH: Add signal extraction interface (https://github.com/nipy/nipype/pull/1647)
ENH: Add a DVARS calculation interface (https://github.com/nipy/nipype/pull/1606)
ENH: New interface to b0calc of FSL-POSSUM (https://github.com/nipy/nipype/pull/1399)
ENH: Add CompCor (https://github.com/nipy/nipype/pull/1599)
ENH: Add duecredit entries (https://github.com/nipy/nipype/pull/1466)
FIX: Python 3 compatibility fixes (https://github.com/nipy/nipype/pull/1572)
REF: Improved PEP8 compliance for fsl interfaces (https://github.com/nipy/nipype/pull/1597)
REF: Improved PEP8 compliance for spm interfaces (https://github.com/nipy/nipype/pull/1593)
TST: Replaced coveralls with codecov (https://github.com/nipy/nipype/pull/1609)
ENH: More BrainSuite interfaces (https://github.com/nipy/nipype/pull/1554)
ENH: Convenient load/save of interface inputs (https://github.com/nipy/nipype/pull/1591)
ENH: Add a Framewise Displacement calculation interface (https://github.com/nipy/nipype/pull/1604)
FIX: Use builtins open and unicode literals for py3 compatibility (https://github.com/nipy/nipype/pull/1572)
TST: reduce the size of docker images & use tags for images (https://github.com/nipy/nipype/pull/1564)
ENH: Implement missing inputs/outputs in FSL AvScale (https://github.com/nipy/nipype/pull/1563)
FIX: Fix symlink test in copyfile (https://github.com/nipy/nipype/pull/1570, https://github.com/nipy/nipype/pull/1586)
ENH: Added support for custom job submission check in SLURM (https://github.com/nipy/nipype/pull/1582)
ENH: Added ANTs interface CreateJacobianDeterminantImage; replaces deprecated JacobianDeterminant (https://github.com/nipy/nipype/pull/1654)