Nicolas Rodriguez
Andreas Dräger
Mike Hucka
David Emanuel Vetter
Roman Schulte
Bhavye Jain
Christoph Blessing
Leandro Watanabe
tmHamm
Onur101010
Jakob Admard
MeikeAi
Ibrahim Vazirabad
Alexander Dörr
Piero Dalle Pezze
Clemens82
Lisa Falk
marine3
Wrzodek
Alex Thomas
thortiede
RolandKeller5
Florian Mittag
Jan Rudolph
Victor Kofia
Tramy Nguyen
Eugen Netz
LeaBuchweitz
Thomas Zajac
2021-12-17
<p>We are pleased to announce the release of JSBML-1.6, which is now available for download from GitHub and Maven.</p>
<p>JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.</p>
<p>For more details, please visit the JSBML project home page:</p>
<p><a href="http://sbml.org/Software/JSBML">http://sbml.org/Software/JSBML</a></p>
Major new features
<ul>
<li>Convenient features, such as quick check for the presence of any specific <code>SBase</code> extension</li>
<li>Improvements to the documentation (JavaDoc, users' guide, and the project's README file)</li>
<li>Broader coverage of the offline validation capability</li>
<li>Improved support for constraint-based modeling in the ModelBuilder: automatic creation of common unit definition objects.</li>
</ul>
Bug fixes
<ul>
<li>Update the dependency to log4j to version xyz after the announcement of a major security issue in the previous version.</li>
<li>JSBML core does no longer have dependencies to any of the packages</li>
<li>Preventing <code>ASTNode.astNodeToTree</code> from recursive calls</li>
<li>Correction of wrong comparisons with <code>==</code> where <code>.equals()</code> needs to be called for <code>String</code> comparison</li>
<li>Fixed Incorrect usage of model annotation</li>
<li>Fixed return type of <code>createRenderCubicBezier</code> method to <code>RenderCubicBezier</code></li>
<li>Fixed incorrect unit derivation</li>
</ul>
<p>Thank you for your interest and support of JSBML and SBML in general.</p>
<p>When using JSBML, please cite</p>
<ul>
<li>N. Rodriguez <em>et al</em>. <a href="http://dx.doi.org/10.1093/bioinformatics/btv341">JSBML 1.0: providing a smorgasbord of options to encode systems biology models</a>. Bioinformatics (2015), 31(20):3383–3386.</li>
<li>A Dräger <em>et al</em>. <a href="https://doi.org/10.1093/bioinformatics/btr361">JSBML: a flexible Java library for working with SBML</a>. Bioinformatics (2011), 27(15):2167–2168.</li>
</ul>
The JSBML team.
https://doi.org/10.5281/zenodo.5789493
oai:zenodo.org:5789493
Zenodo
https://github.com/sbmlteam/jsbml/tree/v1.6
https://doi.org/10.5281/zenodo.595308
info:eu-repo/semantics/openAccess
Other (Open)
sbmlteam/jsbml: JSBML 1.6
info:eu-repo/semantics/other