December 17, 2021 Software Open Access

Nicolas Rodriguez; Andreas Dräger; Mike Hucka; David Emanuel Vetter; Roman Schulte; Bhavye Jain; Christoph Blessing; Leandro Watanabe; tmHamm; Onur101010; Jakob Admard; MeikeAi; Ibrahim Vazirabad; Alexander Dörr; Piero Dalle Pezze; Clemens82; Lisa Falk; marine3; Wrzodek; Alex Thomas; thortiede; RolandKeller5; Florian Mittag; Jan Rudolph; Victor Kofia; Tramy Nguyen; Eugen Netz; LeaBuchweitz; Thomas Zajac

Dublin Core Export

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  <dc:creator>Nicolas Rodriguez</dc:creator>
  <dc:creator>Andreas Dräger</dc:creator>
  <dc:creator>Mike Hucka</dc:creator>
  <dc:creator>David Emanuel Vetter</dc:creator>
  <dc:creator>Roman Schulte</dc:creator>
  <dc:creator>Bhavye Jain</dc:creator>
  <dc:creator>Christoph Blessing</dc:creator>
  <dc:creator>Leandro Watanabe</dc:creator>
  <dc:creator>tmHamm</dc:creator>
  <dc:creator>Onur101010</dc:creator>
  <dc:creator>Jakob Admard</dc:creator>
  <dc:creator>MeikeAi</dc:creator>
  <dc:creator>Ibrahim Vazirabad</dc:creator>
  <dc:creator>Alexander Dörr</dc:creator>
  <dc:creator>Piero Dalle Pezze</dc:creator>
  <dc:creator>Clemens82</dc:creator>
  <dc:creator>Lisa Falk</dc:creator>
  <dc:creator>marine3</dc:creator>
  <dc:creator>Wrzodek</dc:creator>
  <dc:creator>Alex Thomas</dc:creator>
  <dc:creator>thortiede</dc:creator>
  <dc:creator>RolandKeller5</dc:creator>
  <dc:creator>Florian Mittag</dc:creator>
  <dc:creator>Jan Rudolph</dc:creator>
  <dc:creator>Victor Kofia</dc:creator>
  <dc:creator>Tramy Nguyen</dc:creator>
  <dc:creator>Eugen Netz</dc:creator>
  <dc:creator>LeaBuchweitz</dc:creator>
  <dc:creator>Thomas Zajac</dc:creator>
  <dc:date>2021-12-17</dc:date>
  <dc:description>We are pleased to announce the release of JSBML-1.6, which is now available for download from GitHub and Maven.
JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.
For more details, please visit the JSBML project home page:
http://sbml.org/Software/JSBML
Major new features

Convenient features, such as quick check for the presence of any specific SBase extension
Improvements to the documentation (JavaDoc, users' guide, and the project's README file)
Broader coverage of the offline validation capability
Improved support for constraint-based modeling in the ModelBuilder: automatic creation of common unit definition objects.

Bug fixes

Update the dependency to log4j to version xyz after the announcement of a major security issue in the previous version.
JSBML core does no longer have dependencies to any of the packages
Preventing ASTNode.astNodeToTree from recursive calls
Correction of wrong comparisons with == where .equals() needs to be called for String comparison
Fixed Incorrect usage of model annotation
Fixed return type of createRenderCubicBezier method to RenderCubicBezier
Fixed incorrect unit derivation

Thank you for your interest and support of JSBML and SBML in general.
When using JSBML, please cite

N. Rodriguez et al. JSBML 1.0: providing a smorgasbord of options to encode systems biology models. Bioinformatics (2015), 31(20):3383–3386.
A Dräger et al. JSBML: a flexible Java library for working with SBML. Bioinformatics (2011), 27(15):2167–2168.

The JSBML team.</dc:description>
  <dc:identifier>https://zenodo.org/record/5789493</dc:identifier>
  <dc:identifier>10.5281/zenodo.5789493</dc:identifier>
  <dc:identifier>oai:zenodo.org:5789493</dc:identifier>
  <dc:relation>url:https://github.com/sbmlteam/jsbml/tree/v1.6</dc:relation>
  <dc:relation>doi:10.5281/zenodo.595308</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:title>sbmlteam/jsbml: JSBML 1.6</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>software</dc:type>
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