10.5281/zenodo.5789493
https://zenodo.org/records/5789493
oai:zenodo.org:5789493
Nicolas Rodriguez
Nicolas Rodriguez
Babraham Institute, Cambridge, UK
Andreas Dräger
Andreas Dräger
Institute for Bioinformatics and Medical Informatics (IBMI)
Mike Hucka
Mike Hucka
California Institute of Technology
David Emanuel Vetter
David Emanuel Vetter
Roman Schulte
Roman Schulte
Bhavye Jain
Bhavye Jain
@sdsmdg
Christoph Blessing
Christoph Blessing
Leandro Watanabe
Leandro Watanabe
tmHamm
tmHamm
Onur101010
Onur101010
Jakob Admard
Jakob Admard
MeikeAi
MeikeAi
Ibrahim Vazirabad
Ibrahim Vazirabad
Alexander Dörr
Alexander Dörr
Piero Dalle Pezze
Piero Dalle Pezze
@Congenica
Clemens82
Clemens82
Lisa Falk
Lisa Falk
marine3
marine3
Wrzodek
Wrzodek
Alex Thomas
Alex Thomas
C.H. Robinson
thortiede
thortiede
@KohlbacherLab
RolandKeller5
RolandKeller5
Florian Mittag
Florian Mittag
Jan Rudolph
Jan Rudolph
Phd student at MPI for Biochemistry
Victor Kofia
Victor Kofia
Tramy Nguyen
Tramy Nguyen
Eugen Netz
Eugen Netz
LeaBuchweitz
LeaBuchweitz
Thomas Zajac
Thomas Zajac
sbmlteam/jsbml: JSBML 1.6
Zenodo
2021
2021-12-17
https://github.com/sbmlteam/jsbml/tree/v1.6
10.5281/zenodo.595308
v1.6
Other (Open)
We are pleased to announce the release of JSBML-1.6, which is now available for download from GitHub and Maven.
JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.
For more details, please visit the JSBML project home page:
http://sbml.org/Software/JSBML
Major new features
Convenient features, such as quick check for the presence of any specific SBase extension
Improvements to the documentation (JavaDoc, users' guide, and the project's README file)
Broader coverage of the offline validation capability
Improved support for constraint-based modeling in the ModelBuilder: automatic creation of common unit definition objects.
Bug fixes
Update the dependency to log4j to version xyz after the announcement of a major security issue in the previous version.
JSBML core does no longer have dependencies to any of the packages
Preventing ASTNode.astNodeToTree from recursive calls
Correction of wrong comparisons with == where .equals() needs to be called for String comparison
Fixed Incorrect usage of model annotation
Fixed return type of createRenderCubicBezier method to RenderCubicBezier
Fixed incorrect unit derivation
Thank you for your interest and support of JSBML and SBML in general.
When using JSBML, please cite
N. Rodriguez et al. JSBML 1.0: providing a smorgasbord of options to encode systems biology models. Bioinformatics (2015), 31(20):3383–3386.
A Dräger et al. JSBML: a flexible Java library for working with SBML. Bioinformatics (2011), 27(15):2167–2168.
The JSBML team.