Software Open Access
sbmlteam/jsbml: JSBML 1.6
Nicolas Rodriguez; Andreas Dräger; Mike Hucka; David Emanuel Vetter; Roman Schulte; Bhavye Jain; Christoph Blessing; Leandro Watanabe; tmHamm; Onur101010; Jakob Admard; MeikeAi; Ibrahim Vazirabad; Alexander Dörr; Piero Dalle Pezze; Clemens82; Lisa Falk; marine3; Wrzodek; Alex Thomas; thortiede; RolandKeller5; Florian Mittag; Jan Rudolph; Victor Kofia; Tramy Nguyen; Eugen Netz; LeaBuchweitz; Thomas Zajac
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<dct:description><p>We are pleased to announce the release of JSBML-1.6, which is now available for download from GitHub and Maven.</p> <p>JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.</p> <p>For more details, please visit the JSBML project home page:</p> <p><a href="http://sbml.org/Software/JSBML">http://sbml.org/Software/JSBML</a></p> Major new features <ul> <li>Convenient features, such as quick check for the presence of any specific <code>SBase</code> extension</li> <li>Improvements to the documentation (JavaDoc, users' guide, and the project's README file)</li> <li>Broader coverage of the offline validation capability</li> <li>Improved support for constraint-based modeling in the ModelBuilder: automatic creation of common unit definition objects.</li> </ul> Bug fixes <ul> <li>Update the dependency to log4j to version xyz after the announcement of a major security issue in the previous version.</li> <li>JSBML core does no longer have dependencies to any of the packages</li> <li>Preventing <code>ASTNode.astNodeToTree</code> from recursive calls</li> <li>Correction of wrong comparisons with <code>==</code> where <code>.equals()</code> needs to be called for <code>String</code> comparison</li> <li>Fixed Incorrect usage of model annotation</li> <li>Fixed return type of <code>createRenderCubicBezier</code> method to <code>RenderCubicBezier</code></li> <li>Fixed incorrect unit derivation</li> </ul> <p>Thank you for your interest and support of JSBML and SBML in general.</p> <p>When using JSBML, please cite</p> <ul> <li>N. Rodriguez <em>et al</em>. <a href="http://dx.doi.org/10.1093/bioinformatics/btv341">JSBML 1.0: providing a smorgasbord of options to encode systems biology models</a>. Bioinformatics (2015), 31(20):3383–3386.</li> <li>A Dräger <em>et al</em>. <a href="https://doi.org/10.1093/bioinformatics/btr361">JSBML: a flexible Java library for working with SBML</a>. Bioinformatics (2011), 27(15):2167–2168.</li> </ul> The JSBML team.</dct:description>
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910
111
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 910 | 46 |
| Downloads | 111 | 2 |
| Data volume | 7.9 GB | 154.7 MB |
| Unique views | 754 | 41 |
| Unique downloads | 90 | 2 |
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