Published December 17, 2021
| Version v1.6
Software
Open
sbmlteam/jsbml: JSBML 1.6
Creators
- Nicolas Rodriguez1
- Andreas Dräger2
- Mike Hucka3
- David Emanuel Vetter
- Roman Schulte
- Bhavye Jain4
- Christoph Blessing
- Leandro Watanabe
- tmHamm
- Onur101010
- Jakob Admard
- MeikeAi
- Ibrahim Vazirabad
- Alexander Dörr
- Piero Dalle Pezze5
- Clemens82
- Lisa Falk
- marine3
- Wrzodek
- Alex Thomas6
- thortiede7
- RolandKeller5
- Florian Mittag
- Jan Rudolph8
- Victor Kofia
- Tramy Nguyen
- Eugen Netz
- LeaBuchweitz
- Thomas Zajac
- 1. Babraham Institute, Cambridge, UK
- 2. Institute for Bioinformatics and Medical Informatics (IBMI)
- 3. California Institute of Technology
- 4. @sdsmdg
- 5. @Congenica
- 6. C.H. Robinson
- 7. @KohlbacherLab
- 8. Phd student at MPI for Biochemistry
Description
We are pleased to announce the release of JSBML-1.6, which is now available for download from GitHub and Maven.
JSBML is a community-driven project to create a free, open-source, pure Java library for reading, writing, and manipulating SBML files and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.
For more details, please visit the JSBML project home page:
http://sbml.org/Software/JSBML
Major new features- Convenient features, such as quick check for the presence of any specific
SBase
extension - Improvements to the documentation (JavaDoc, users' guide, and the project's README file)
- Broader coverage of the offline validation capability
- Improved support for constraint-based modeling in the ModelBuilder: automatic creation of common unit definition objects.
- Update the dependency to log4j to version xyz after the announcement of a major security issue in the previous version.
- JSBML core does no longer have dependencies to any of the packages
- Preventing
ASTNode.astNodeToTree
from recursive calls - Correction of wrong comparisons with
==
where.equals()
needs to be called forString
comparison - Fixed Incorrect usage of model annotation
- Fixed return type of
createRenderCubicBezier
method toRenderCubicBezier
- Fixed incorrect unit derivation
Thank you for your interest and support of JSBML and SBML in general.
When using JSBML, please cite
- N. Rodriguez et al. JSBML 1.0: providing a smorgasbord of options to encode systems biology models. Bioinformatics (2015), 31(20):3383–3386.
- A Dräger et al. JSBML: a flexible Java library for working with SBML. Bioinformatics (2011), 27(15):2167–2168.
Files
sbmlteam/jsbml-v1.6.zip
Files
(77.3 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/sbmlteam/jsbml/tree/v1.6 (URL)