Charles Tapley Hoyt
2021-12-08
<p>It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.</p>
<p>We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.</p>
<p>It was generated with the following code in the shell:</p>
<pre>pip install pyobo
pyobo obo xrefs</pre>
<p>More information on this blog post: <a href="https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html">https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html</a>.</p>
https://doi.org/10.5281/zenodo.5768625
oai:zenodo.org:5768625
eng
Zenodo
https://zenodo.org/communities/isb
https://zenodo.org/communities/linkeddata
https://zenodo.org/communities/bioinformatics
https://doi.org/10.5281/zenodo.3757265
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
Cross References
Ontologies
Namespaces
Inspector Javert's Xref Database
info:eu-repo/semantics/other