Dataset Open Access

Inspector Javert's Xref Database

Charles Tapley Hoyt

It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.

We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.

It was generated with the following code in the shell:

pip install pyobo
pyobo obo xrefs

More information on this blog post: https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html.

Files (153.2 MB)
Name Size
xrefs.tsv.gz
md5:ef439e1bdb46bc20f265dd6a2f5667fe
153.2 MB Download
xrefs_metadata.json
md5:ef59aedd687901717bb64b41e02ea1fa
105 Bytes Download
xrefs_sample.tsv
md5:0922972aed14bd38b9892d17fb1d6cba
412 Bytes Download
xrefs_summary.tsv
md5:303ae7cd35bcc4a8f589e9913847a946
1.4 kB Download
xrefs_summary_detailed.tsv
md5:a7f8a787fff77bb72f976638d09f5817
17.0 kB Download
xrefs_summary_provenance.tsv
md5:468f71def840b1e2f403248ea826f583
19.9 kB Download
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