Software Open Access
LayNii: A software suite for layer-fMRI
Huber, Laurentius;
Benedikt, Poser;
Bandettini, Peter;
Arora, Kabir;
Wagstyl, Konrad;
Cho, Shinho;
Goense, Jozien;
Nothnagel, Nils;
Morgan, Andrew Tyler;
van den Hurk, Job;
Müller, Anna Katharina;
Reynolds, Richard;
Glen, Daniel;
Goebel, Rainer;
Gulban, Omer Faruk
Purpose of the release
LN2_MULTILATERATE and LN2_PATCH_FLATTEN focused release to serve as a checkpoint for:
- Gulban, O. F., Bollmann, S., Huber, R., Wagstyl, K., Goebel, R., Poser, B. A., Kay, K., Ivanov, D. (2021). Mesoscopic Quantification of Cortical Architecture in the Living Human Brain. BioRxiv. https://doi.org/10.1101/2021.11.25.470023
LN2_LAYERSnow outputs approximately equal number of voxels for each layer with-equal_countsflag. This option can be useful for low resolution inputs (e.g. > 0.5 mm iso.). Care must be taken when activating this flag because it will equalize the number of voxels for each layer without respecting equi-distant and equi-volume cortical depth measurements.LN_RAGRUGnow has-scaleparameter to create rectangular tessellations at lower resolutions (integer multiples of the input voxel dimensions.
If you use this software, please cite it as below.
Files
(80.3 MB)
| Name | Size | |
|---|---|---|
|
layerfMRI/LAYNII-v2.2.0.zip
md5:90d582c6aa9f6903a0b6f0a1fc7b1e60 |
80.3 MB | Download |
949
115
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 949 | 109 |
| Downloads | 115 | 3 |
| Data volume | 5.8 GB | 240.9 MB |
| Unique views | 597 | 81 |
| Unique downloads | 97 | 3 |
Available in
Indexed in
Indexed in
- Publication date:
- July 16, 2021
- DOI:
-
- Related identifiers:
- Supplement to
- License (for files):
- Other (Open)