There is a newer version of this record available.

Software Open Access

LayNii: A software suite for layer-fMRI

Huber, Laurentius; Benedikt, Poser; Bandettini, Peter; Arora, Kabir; Wagstyl, Konrad; Cho, Shinho; Goense, Jozien; Nothnagel, Nils; Morgan, Andrew Tyler; van den Hurk, Job; Müller, Anna Katharina; Reynolds, Richard; Glen, Daniel; Goebel, Rainer; Gulban, Omer Faruk

Purpose of the release

LN2_MULTILATERATE and LN2_PATCH_FLATTEN focused release to serve as a checkpoint for:

  • Gulban, O. F., Bollmann, S., Huber, R., Wagstyl, K., Goebel, R., Poser, B. A., Kay, K., Ivanov, D. (2021). Mesoscopic Quantification of Cortical Architecture in the Living Human Brain. BioRxiv.
  • LN2_LAYERS now outputs approximately equal number of voxels for each layer with -equal_counts flag. This option can be useful for low resolution inputs (e.g. > 0.5 mm iso.). Care must be taken when activating this flag because it will equalize the number of voxels for each layer without respecting equi-distant and equi-volume cortical depth measurements.
  • LN_RAGRUG now has -scale parameter to create rectangular tessellations at lower resolutions (integer multiples of the input voxel dimensions.
If you use this software, please cite it as below.
Files (80.3 MB)
Name Size
80.3 MB Download
All versions This version
Views 949109
Downloads 1153
Data volume 5.8 GB240.9 MB
Unique views 59781
Unique downloads 973


Cite as