Dataset Open Access

BridgeDb: Human and SARS-related corona virus gene/protein mapping database derived from Wikidata

Kutmon, Martina; Willighagen, Egon


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{
  "description": "<p>Gene/Protein mappings for human and SARS-related coronaviruses. Data is derived from Wikidata. Mappings from Wikidata to NCBI Gene, RefSeq, UniProt, and&nbsp;Guide to Pharmacology Target&nbsp;are provided in the .bridge file.</p>\n\n<ul>\n\t<li>179&nbsp;Wikidata (Wd) identifiers</li>\n\t<li>82 Uniprot-TrEMBL (S) identifiers</li>\n\t<li>70 NCBI Gene (L) identifiers</li>\n\t<li>66 RefSeq (Q) identifiers</li>\n\t<li>9 Guide to Pharmacology Target&nbsp;(Gpt) identifiers</li>\n</ul>\n\n<p>Virus name was added as attribute (&quot;virus&quot;) to Wikidata Xrefs.</p>", 
  "license": "", 
  "creator": [
    {
      "affiliation": "Maastricht University", 
      "@id": "https://orcid.org/0000-0002-7699-8191", 
      "@type": "Person", 
      "name": "Kutmon, Martina"
    }, 
    {
      "affiliation": "Maastricht University", 
      "@id": "https://orcid.org/0000-0001-7542-0286", 
      "@type": "Person", 
      "name": "Willighagen, Egon"
    }
  ], 
  "url": "https://zenodo.org/record/5734440", 
  "datePublished": "2021-11-27", 
  "version": "2021-11-27", 
  "keywords": [
    "BridgeDb", 
    "identifier mapping", 
    "coronavirus"
  ], 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/4eb05e6e-2c1b-4c96-a962-9fdfdc3f3454/humancorona-2021-11-27.bridge", 
      "encodingFormat": "bridge", 
      "@type": "DataDownload"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.5734440", 
  "@id": "https://doi.org/10.5281/zenodo.5734440", 
  "@type": "Dataset", 
  "name": "BridgeDb: Human and SARS-related corona virus gene/protein mapping database derived from Wikidata"
}
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