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Published November 28, 2021 | Version v0.13.13
Software Open

PartSeg - segmentation and reconstruction tool for 3D microscopy images

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Institute of Informatics, University of Warsaw, Warsaw, Poland
  • 2. Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland
  • 3. Institute of Informatics, University of Warsaw, Warsaw, Poland

Contributors

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland

Description

0.13.13 Bug Fixes

  • Fix bugs in the generation process of the changelog for release. (#428)
  • Restoring ROI on home button click in compare viewer (#443)
  • Fix Measurement name prefix in bundled PartSeg. (#458)
  • Napari widgets registration in pyinstaller bundle (#465)
  • Hide points button if no points are loaded, hide Mask checkbox if no mask is set (#463)
  • Replace Label data instead of adding/removing layers - fix blending layers (#464)
Features
  • Add threshold information in layer annotation in the Multiple Otsu ROI extraction method (#430)
  • Add option to select rendering method for ROI (#431)
  • Add callback mechanism to ProfileDict, live update of ROI render parameters (#432)
  • Move the info bar on the bottom of the viewer (#442)
  • Add options to load recent files in multiple files widget (#444)
  • Add ROI annotations as properties to napari labels layer created by ROI Extraction widgets (#445)
  • Add signals to ProfileDict, remove redundant synchronization mechanisms (#449)
  • Allow ignoring updates for 21 days (#453)
  • Save all components if no components selected in mask segmentation (#456)
  • Add modal dialog for search ROI components (#459)
  • Add full measurement support as napari widget (#460)
  • Add search labels as napari widget (#467)
Refactor
  • Export common code for load/save dialog to one place (#437)
  • Change most of call QFileDialog to more generic code (#440)
Testing
  • Add test for PartSeg.common_backend module (#433)
Changes:
  • 9fc15bb6f2aed2e657e5e745b3b7038193b9975a Update changelog (#468)
  • 2fb65aea6d2d16aee4f6d4e9b2542c388abb9698 feat: Add search labels as napari widget (#467)
  • 9cac2ab3e802d86d94c6d2ab17936783b6b6f418 feat: Add full measurement support as napari widget (#460)
  • 76e588d0e75e26088d9bd0d1f220a404a0881ae3 fix: Replace Label data instead of adding/removing layers - fix blending layers (#464)
  • 0cb926144338c0b66ae243d599dcc8ba80476a77 fix: Hide points button if no points are loaded, hide Mask checkbox if no mask is set (#463)
  • c60816efa6dbc497d3cde630c902894cff8ed085 fix: napari widgets registration in pyinstaller bundle (#465)
  • 5e812d013768341b41dc3e33a6fac004ee8feaf6 feat: Add modal dialog for search ROI components (#459)
  • 4acf81f739a520480a9224055a2038f64f598afb fix: Fix Measurement name prefix in bundled PartSeg. (#458)
  • a94a698a7fd34cb97c5a82ac63a3c1417260efc5 feat: Save all components if no components selected in mask segmentation (#456)
  • 6f2287112aa3757cd2420619b6405534ab85be37 Fix try of removing ignore.txt if not exists (#455) <details><summary><b>See More</b></summary>

  • e79baeaa7a26e3622c84194ecc79072af6f17675 [pre-commit.ci] pre-commit autoupdate (#448)

  • c2b8949d9937ab3312cb5a91a432471077d9913f feat: Allow ignore updates for 21 days (#453)
  • 1c9ebabd2e8cedbfed491f2029ddb34c8c1fc34b feat: Add singals to ProfileDict, remove redundant synchronization mechanisms (#449)
  • dedd823837e419839328f5526aec350f25934502 Add missed call of reset_choices in napari mask create widget (#452)
  • 19ee18184a0ac72229d0124fa59beadb0d48b23d Remove roi as parameter of ProjectInfoBase (#447)
  • 814e5c1c957aa2f6f6216927cda55e6027b50142 Last files in multiple load dialog (#446)
  • 06dec2d7334d56f8283d374110ae900fb1b7fd3a feat: Add ROI annotations as properties to napari labels layer created by ROI Extraction widgets (#445)
  • c6b5af962f527519e1f4c48815b6dd9d40f72c88 feat: Add options to load recent files in multiple files widget (#444)
  • 9cc44ba9f881da2c8cee2cacda7b3763dc5a8135 fix: Restoring ROI on home button click in compare viewer (#443)
  • f13903d3014fae349a5381e995b3923bb14d4c46 feat: Move info bar on the bottom of viewer (#442)
  • 649bd7adace1e15eedb84f8c1421a0adad915969 fix bug with loading points to multiple files widget (#441)
  • 7afab56c532016b61567c9693f9c660fed949c93 [pre-commit.ci] pre-commit autoupdate (#439)
  • 10852e6ca811fc695a780149df61ac39a2aac040 refactor: Change most of call QFileDialog to more generic code (#440)
  • b1c2cb903b85102568381e8446c4ce528f601769 refactor: export common code for load/save dialog to one place (#437)
  • c6f14db3c65c205f8259de99cc7db5026fa1184e Update requirements, solve dask alert (#438)
  • 106ba0a39d79d2fa65acad9c4df60056cc4840c1 fix name of shallow test
  • 3cf6e37502e23d9ea69b5c4e310893dee4e2094a Fix no mocing version which cause pre-relase test fail (#435)
  • 80c629537feddfadc4f2866a23ae8245e0e2dfec tests: Add test for PartSeg.common_backend module (#433)
  • 99516b83bbb051f3125ccf8dca9d2c2ce8a8926f feat: Add callback mechanism to ProfileDict, live update of ROI render parameters (#432)
  • 3f533f47e967581783c8dba126a422052c6049e4 feat: Add option to select rendering method for ROI (#431)
  • 1cb54980406a81ecd2a4b58736e6c66e319bd33a feat: Add threshold information in layer annotation in the Multiple Otsu ROI extraction method (#430)
  • f30763f602abdb04fcc637f001217300af49cfa5 fix: Bugs in generation proces of changelog for release. (#428)

This list of changes was auto generated.</details>

Files

4DNucleome/PartSeg-v0.13.13.zip

Files (7.2 MB)

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