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<a href=\"http://imgur.com/qLNrh5B\"><img src=\"http://i.imgur.com/qLNrh5B.png\" title=\"source: Justin C. Bagley\" width=60% height=60% align=\"center\" /></a>
\n\nScripts for file processing and analysis in phylogenomics & phylogeography
\nThis is a PIrANHA (PhylogenetIcs ANd pHylogeogrAphy) v0.1.4, a new development release version of PIrANHA that provides a number of utility scripts and pipelines for file processing and analysis in phylogenetics and phylogeography. The current code in PIrANHA has been written to largely focus on 1) analyses of DNA sequence data and SNPs or SNP loci generated from massively parallel sequencing runs on ddRAD-seq genomic libraries (e.g. Peterson et al. 2012), and 2) automating running these software programs on the user's personal machine (e.g. MAGNET pipeline and pyRAD2PartitionFinder scripts) or a remote supercomputer machine, and then conducting post-processing of the results.
\nWhat's new?\n