ZARP: The Zavolab Automated RNA-seq Pipeline
Creators
Description
ZARP (Zavolab Automated RNA-seq Pipeline) is a generic RNA-Seq analysis workflow that allows users to process and analyze Illumina short-read sequencing libraries with minimum effort. Better yet: With our companion ZARP-cli command line interface, you can start ZARP runs with the simplest and most intuitive commands.
RNA-seq analysis doesn't get simpler than that!
ZARP relies on publicly available bioinformatics tools and currently handles single or paired-end stranded bulk RNA-seq data. The workflow is developed in Snakemake, a widely used workflow management system in the bioinformatics community.
ZARP will pre-process, align and quantify your single- or paired-end stranded bulk RNA-seq sequencing libraries with publicly available state-of-the-art bioinformatics tools. ZARP's browser-based rich reports and visualitations will give you meaningful initial insights in the quality and composition of your sequencing experiments - fast and simple. Whether you are an experimentalist struggling with large scale data analysis or an experienced bioinformatician, when there's RNA-seq data to analyze, just zarp 'em!
Notes
Files
zarp-0.3.0.zip
Files
(425.0 kB)
Name | Size | Download all |
---|---|---|
md5:622c4ff6988773b36e2223c005de6cbe
|
425.0 kB | Preview Download |
Additional details
Related works
- Is published in
- Preprint: 10.1101/2021.11.18.469017 (DOI)
- Is supplement to
- Software: https://github.com/zavolanlab/zarp (URL)
Funding
Software
- Repository URL
- https://github.com/zavolanlab/zarp
- Programming language
- Snakemake
- Development Status
- Active