November 15, 2021 Software Open Access

Haimasree

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  <identifier identifierType="DOI">10.5281/zenodo.5703213</identifier>
  <creators>
    <creator>
      <creatorName>Haimasree</creatorName>
      <affiliation>EMBL</affiliation>
    </creator>
  </creators>
  <titles>
    <title>kipoi/models: v2021-11-15</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2021</publicationYear>
  <dates>
    <date dateType="Issued">2021-11-15</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/5703213</alternateIdentifier>
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  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/kipoi/models/tree/v2021-11-15</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.1636316</relatedIdentifier>
  </relatedIdentifiers>
  <version>v2021-11-15</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">What's Changed
&lt;ul&gt;
&lt;li&gt;Fixed folder structure for epidermal_basset by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/248"&gt;https://github.com/kipoi/models/pull/248&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Fixed ci by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/249"&gt;https://github.com/kipoi/models/pull/249&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;SeqVec removed by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/250"&gt;https://github.com/kipoi/models/pull/250&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Parallelized CI by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/253"&gt;https://github.com/kipoi/models/pull/253&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Attempting to add seqvec back to ci by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/254"&gt;https://github.com/kipoi/models/pull/254&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Added xpresso dataloader by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/255"&gt;https://github.com/kipoi/models/pull/255&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Update model-template.yaml of Xpresso to use recent version of kipoiseq by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/256"&gt;https://github.com/kipoi/models/pull/256&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Adding cython by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/257"&gt;https://github.com/kipoi/models/pull/257&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Added default arguments to Xpresso's yaml representation by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/258"&gt;https://github.com/kipoi/models/pull/258&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Unpin kipoi packages and upgrade python 3.5 to 3.6 by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/259"&gt;https://github.com/kipoi/models/pull/259&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Fixed ci by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/260"&gt;https://github.com/kipoi/models/pull/260&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Added DeepFlyBrain by @itaskiran in &lt;a href="https://github.com/kipoi/models/pull/261"&gt;https://github.com/kipoi/models/pull/261&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Fixed ci by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/262"&gt;https://github.com/kipoi/models/pull/262&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Pinning deepfly dependencies by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/263"&gt;https://github.com/kipoi/models/pull/263&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Fixed ci by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/264"&gt;https://github.com/kipoi/models/pull/264&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Upgrading base docker image of ci by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/265"&gt;https://github.com/kipoi/models/pull/265&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Machine executor added by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/266"&gt;https://github.com/kipoi/models/pull/266&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Fixed date_release job by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/267"&gt;https://github.com/kipoi/models/pull/267&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Add seqvec back to ci by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/268"&gt;https://github.com/kipoi/models/pull/268&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Fixed kipoisplice by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/270"&gt;https://github.com/kipoi/models/pull/270&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Add APARENT model by @Hoeze in &lt;a href="https://github.com/kipoi/models/pull/269"&gt;https://github.com/kipoi/models/pull/269&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Improved aparent dependencies by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/271"&gt;https://github.com/kipoi/models/pull/271&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Updating preprocessing-variant-effects to reflect the current status in kipoi-veff2 intead of kipoi-veff by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/272"&gt;https://github.com/kipoi/models/pull/272&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Adding resource class to machine instance by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/273"&gt;https://github.com/kipoi/models/pull/273&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Fixed ci by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/274"&gt;https://github.com/kipoi/models/pull/274&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Removing postprocessing field from model.yaml by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/275"&gt;https://github.com/kipoi/models/pull/275&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Fixed ci by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/276"&gt;https://github.com/kipoi/models/pull/276&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Adding singularity and docker container info by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/277"&gt;https://github.com/kipoi/models/pull/277&lt;/a&gt;&lt;/li&gt;
&lt;li&gt;Add tests with singularity containers by @haimasree in &lt;a href="https://github.com/kipoi/models/pull/278"&gt;https://github.com/kipoi/models/pull/278&lt;/a&gt;&lt;/li&gt;
&lt;/ul&gt;
&lt;p&gt;&lt;strong&gt;Full Changelog&lt;/strong&gt;: &lt;a href="https://github.com/kipoi/models/compare/v2021-06-02...v2021-11-15"&gt;https://github.com/kipoi/models/compare/v2021-06-02...v2021-11-15&lt;/a&gt;&lt;/p&gt;</description>
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