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cangermueller/deepcpg: Adds evaluation scripts and notebooks, improves documentation, and fixes minor bugs.

Christof Angermueller


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  <identifier identifierType="DOI">10.5281/zenodo.570138</identifier>
  <creators>
    <creator>
      <creatorName>Christof Angermueller</creatorName>
      <affiliation></affiliation>
    </creator>
  </creators>
  <titles>
    <title>cangermueller/deepcpg: Adds evaluation scripts and notebooks, improves documentation, and fixes minor bugs.</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <dates>
    <date dateType="Issued">2017-05-01</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/570138</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/cangermueller/deepcpg/tree/1.0.4</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.597999</relatedIdentifier>
  </relatedIdentifiers>
  <version>1.0.4</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;ul&gt;
&lt;li&gt;Adds &lt;a href="http://deepcpg.readthedocs.io/en/latest/scripts/index.html#module-scripts.dcpg_eval_perf"&gt;dcpg_eval_perf.py&lt;/a&gt; and R markdown files for computing and visualizing performance metrics genome-wide and in annotated contexts.&lt;/li&gt;
&lt;li&gt;Adds &lt;a href="http://deepcpg.readthedocs.io/en/latest/scripts/index.html#module-scripts.dcpg_snp"&gt;dcpg_snp.py&lt;/a&gt; for computing mutation effects.&lt;/li&gt;
&lt;li&gt;Adds &lt;a href="https://github.com/cangermueller/deepcpg/tree/master/examples"&gt;notebooks&lt;/a&gt; on computing mutation effects and predicting inter-cell statistics.&lt;/li&gt;
&lt;li&gt;Adds documentation of &lt;a href="http://deepcpg.readthedocs.io/latest/scripts/index.html"&gt;DeepCpG scripts&lt;/a&gt;.&lt;/li&gt;
&lt;li&gt;Adds integration tests.&lt;/li&gt;
&lt;li&gt;Includes minor bug-fixes.&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
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