Datasets and Pipeline V1.0 from An Atlas of Plant Transposable Elements
Creators
- 1. Department of Computer Science, Bioinformatics and Pattern Recognition Group, Federal University of Technology - Paraná (UTFPR), Cornélio Procópio 86300-000, Brazil
- 2. Department of Technology, São Paulo State University (UNESP), Jaboticabal 14884-900, Brazil
- 3. Institut de Recherche pour le Développement, CIRAD, University of Montpellier, Montpellier, France; Department of Electronics and Automatization, Universidad Autónoma de Manizales, Manizales, Colombia
- 4. Department of Biodiversity, Institute of Biosciences, São Paulo State University (UNESP), Rio Claro 13506-900, Brazil
Description
In this repository, we deposited support data for the article "An Atlas of Plant Transposable Elements", available at http://apte.cp.utfpr.edu.br/.
Here, we included:
1.) Supplementary material data:
A) SuppMat_1.xlsx: The genome assembly reference access from Ensembl Plants species used.
B) SuppMat_2.docx: A brief transposable elements annotation steps are used in this work.
2.) Code and software: all script code create, third-party software, how we are used it, are detailed using Arabidopsis thaliana genome as an example in the GitHub: https://github.com/alerpaschoal/apte_pipeline under the MIT license (please see details in licence.txt file). For the third part-software, consult their terms.
To report bugs, to ask for help, and to give any feedback, please contact Alexandre R. Paschoal (paschoal@utfpr.edu.br) or Douglas S. Domingues (douglas.domingues@unesp.br).
Notes
Files
alerpaschoal/apte_pipeline-v1.0.zip
Files
(24.2 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:b5b5fd4eb8e6dbf9aac7e1225fc24101
|
24.2 MB | Preview Download |
|
md5:c1b1d68b06b55f1badb656054157a068
|
10.1 kB | Download |
|
md5:3b13c320c4929cac0cd19b3137ff0df9
|
12.2 kB | Download |
Additional details
Related works
- Is supplement to
- https://github.com/alerpaschoal/apte_pipeline/tree/v1.0 (URL)