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framework-1.0.0.zip

ASaiM-framework-8fc102b
- .gitignore 190 Bytes
- .travis.yml 209 Bytes
- CITATION 0 Bytes
- CONTRIBUTING.md 750 Bytes
- LICENSE 11.3 kB
- README.md 5.4 kB
- data
  - chosen_tools
    - manipulation_tool_list.yaml 6.2 kB
    - preprocessing_tool_list.yaml 1.9 kB
    - stuctural_functional_analysis_tool_list.yaml 2.5 kB
    - visualization_stats_tool_list.yaml 2.2 kB
  - config.yml 770 Bytes
  - db
    - cog
      - src
        
        download_database.py 1.5 kB
        
        extract_cog_data.py 4.9 kB
        
        formate_database_for_humann.py 11.2 kB
    - refseq
      - src
        
        RefSeq_database_download.py 1.1 kB
  - demo
    - metatranscriptomic_data
      - R1_sequences.fastq 4.4 MB
      - R2_sequences.fastq 4.4 MB
  - galaxy_config
    - dependency_resolvers_conf.xml 93 Bytes
    - job_conf.xml 612 Bytes
    - shed_tool_conf.xml 1.6 kB
    - tool_conf.xml 2.1 kB
    - tool_data_table_conf.xml 40 Bytes
    - tool_shed.ini 6.0 kB
    - tool_sheds_conf.xml 299 Bytes
  - images
    - asaim_logo.svg 8.0 kB
  - static
    - welcome.html 3.5 kB
- requirements.txt 32 Bytes
- src
  - clean_asaim.sh 431 Bytes
  - configure
    - clean_postgres_db.sh 687 Bytes
    - setup_postgre_db.sh 334 Bytes
    - template_proftpd.conf 1.9 kB
  - configure.sh 1.5 kB
  - get_process_stat.sh 402 Bytes
  - install_dependencies
    - install_for_debian.sh 717 Bytes
    - install_for_mac_os.sh 586 Bytes
    - install_for_rhel.sh 630 Bytes
  - install_dependencies.sh 456 Bytes
  - launch_asaim.sh 319 Bytes
  - misc.sh 6.0 kB
  - prepare_asaim
    - get_installed_tool_info.py 927 Bytes
    - integrate_tool.py 1.6 kB
    - integrate_workflow_in_gi.py 608 Bytes
    - launch_galaxy.sh 3.1 kB
    - parse_tool_playbook_yaml.py 988 Bytes
    - populate_galaxy.sh 636 Bytes
    - prepare_databases.sh 4.7 kB
  - stop_asaim.sh 62 Bytes