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joelnitta/canaper: v0.0.1

Joel Nitta


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  <dc:creator>Joel Nitta</dc:creator>
  <dc:date>2021-10-26</dc:date>
  <dc:description>NEW FEATURES

Add cpr_rand_comm() function for generating a random community
2f3318c1d62f401d7c99bdcc16c64194359c3fbe

Implement user-provided community matrix randomization functions


BREAKING CHANGES

Use vegan for community matrix randomizations instead of picante
b0a2d47130398eb62e28eba4783057f781763645

BUG FIXES

Fix error in classification of endemism types with cpr_classify_endem(),
where super-endemic cells were previously being assigned if pe_obs_p_upper
or pe_obs_alt_p_upper were highly significant (P &gt; 0.99), to requiring
both to be highly significant 2f3318c1d62f401d7c99bdcc16c64194359c3fbe

Fix calculation of RPD, RPE where alternative tree had all branch lengths
converted to same value, to converting only non-zero branch lengths to same
value 50ed6e975d14adba334f06a984d521ff69ed961c

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  <dc:identifier>https://zenodo.org/record/5599240</dc:identifier>
  <dc:identifier>10.5281/zenodo.5599240</dc:identifier>
  <dc:identifier>oai:zenodo.org:5599240</dc:identifier>
  <dc:relation>url:https://github.com/joelnitta/canaper/tree/0.0.1</dc:relation>
  <dc:relation>doi:10.5281/zenodo.5094032</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:title>joelnitta/canaper: v0.0.1</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>software</dc:type>
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