There is a newer version of this record available.

Software Open Access

joelnitta/canaper: v0.0.1

Joel Nitta


DataCite XML Export

<?xml version='1.0' encoding='utf-8'?>
<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd">
  <identifier identifierType="DOI">10.5281/zenodo.5599240</identifier>
  <creators>
    <creator>
      <creatorName>Joel Nitta</creatorName>
      <affiliation>Tokyo University</affiliation>
    </creator>
  </creators>
  <titles>
    <title>joelnitta/canaper: v0.0.1</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2021</publicationYear>
  <dates>
    <date dateType="Issued">2021-10-26</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/5599240</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/joelnitta/canaper/tree/0.0.1</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.5094032</relatedIdentifier>
  </relatedIdentifiers>
  <version>0.0.1</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">NEW FEATURES
&lt;ul&gt;
&lt;li&gt;&lt;p&gt;Add &lt;code&gt;cpr_rand_comm()&lt;/code&gt; function for generating a random community
2f3318c1d62f401d7c99bdcc16c64194359c3fbe&lt;/p&gt;
&lt;/li&gt;
&lt;li&gt;&lt;p&gt;Implement user-provided community matrix randomization functions&lt;/p&gt;
&lt;/li&gt;
&lt;/ul&gt;
BREAKING CHANGES
&lt;ul&gt;
&lt;li&gt;Use &lt;code&gt;vegan&lt;/code&gt; for community matrix randomizations instead of &lt;code&gt;picante&lt;/code&gt;
b0a2d47130398eb62e28eba4783057f781763645&lt;/li&gt;
&lt;/ul&gt;
BUG FIXES
&lt;ul&gt;
&lt;li&gt;&lt;p&gt;Fix error in classification of endemism types with &lt;code&gt;cpr_classify_endem()&lt;/code&gt;,
where super-endemic cells were previously being assigned if &lt;code&gt;pe_obs_p_upper&lt;/code&gt;
&lt;strong&gt;or&lt;/strong&gt; &lt;code&gt;pe_obs_alt_p_upper&lt;/code&gt; were highly significant (P &amp;gt; 0.99), to requiring
&lt;strong&gt;both&lt;/strong&gt; to be highly significant 2f3318c1d62f401d7c99bdcc16c64194359c3fbe&lt;/p&gt;
&lt;/li&gt;
&lt;li&gt;&lt;p&gt;Fix calculation of RPD, RPE where alternative tree had all branch lengths
converted to same value, to converting only non-zero branch lengths to same
value 50ed6e975d14adba334f06a984d521ff69ed961c&lt;/p&gt;
&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
</resource>
219
2
views
downloads
All versions This version
Views 21931
Downloads 21
Data volume 266.4 kB174.9 kB
Unique views 19520
Unique downloads 21

Share

Cite as